LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
RP4-717I23.3
hsa-miR-17-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440778
Biotype: lincRNA
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
145-165
0.027
3
RP11-588H23.3
hsa-miR-17-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548687
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-474
0.011
1
9mer
5484-5508
0.005
0
7mer
653-669
0.005
3
6mer
3134-3158
0.002
2
6mer
4070-4093
0.002
1
6mer
3710-3727
0.001
2
6mer
3338-3354
0.001
1
LINC00645
hsa-miR-17-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557359
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3437-3449
0.006
1
7mer
2378-2398
0.005
1
7mer
2015-2040
0.005
1
7mer
633-648
0.004
1
6mer
1336-1348
0.003
1
6mer
2858-2881
0.002
0
6mer
1687-1708
0.001
0
6mer
2103-2120
0.001
3
RP11-626K17.3
hsa-miR-17-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565549
Biotype: lincRNA
Gene id: ENSG00000261541
Gene Name: RP11-626K17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3851-3872
0.008
1
7mer
3533-3553
0.008
0
9mer
2209-2228
0.005
0
7mer
1816-1841
0.003
0
6mer
999-1018
0.003
1
RP11-138P22.1
hsa-miR-17-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581901
Biotype: antisense
Gene id: ENSG00000266527
Gene Name: RP11-138P22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2005-2025
0.010
1
6mer
186-209
0.007
5
7mer
1470-1492
0.006
0
6mer
1290-1305
0.005
5
AC023481.1
hsa-miR-17-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000435368
Biotype: lincRNA
Gene id: ENSG00000231401
Gene Name: AC023481.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
233-255
0.017
1
8mer
93-118
0.010
0
LOC102659288
hsa-miR-17-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110015.1
Biotype: lincRNA
Gene id: NR_110015.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1052-1073
0.023
0
6mer
978-1002
0.004
2
RP11-798G7.8
hsa-miR-17-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587960
Biotype: lincRNA
Gene id: ENSG00000266918
Gene Name: RP11-798G7.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1797-1820
0.007
1
6mer
789-813
0.006
2
7mer
1830-1857
0.006
1
9mer
1311-1330
0.005
1
6mer
1245-1263
0.004
3
LOC102659288
hsa-miR-17-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110014.1
Biotype: lincRNA
Gene id: NR_110014.1 (gene)
Gene Name: LOC102659288
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1120-1141
0.023
0
6mer
1046-1070
0.004
2
XXbac-BPGBPG55C20.2
hsa-miR-17-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606125
Biotype: lincRNA
Gene id: ENSG00000272316
Gene Name: XXbac-BPGBPG55C20.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4417-4440
0.010
Not Conserved
7mer
477-499
0.005
0
6mer
5035-5050
0.003
Not Conserved
6mer
1421-1437
0.003
2
6mer
1953-1975
0.002
0
6mer
2819-2845
0.002
2
6mer
2322-2347
0.002
0
6mer
3910-3934
0.001
Not Conserved
FRMD6-AS1
hsa-miR-17-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000617151
Biotype: antisense
Gene id: ENSG00000273888
Gene Name: FRMD6-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-183
0.015
0
9mer
510-530
0.006
1
6mer
1358-1384
0.003
3
9mer
1140-1164
0.003
Not Conserved
EPB41L4A-AS1
hsa-miR-17-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000427306
Biotype: lincRNA
Gene id: ENSG00000224032
Gene Name: EPB41L4A-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
847-867
0.027
1
TPTEP1
hsa-miR-17-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000415121
Biotype: lincRNA
Gene id: ENSG00000100181
Gene Name: TPTEP1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1003-1015
0.027
1
XLOC_008274
hsa-miR-17-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017605
Biotype: transcript isomorph
Gene id: XLOC_008274
Gene Name: XLOC_008274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
800-825
0.008
1
9mer
1791-1811
0.004
0
6mer
211-227
0.004
0
8mer
3146-3158
0.004
Not Conserved
6mer
2161-2182
0.003
1
6mer
2734-2758
0.002
1
6mer
2848-2872
0.002
1
6mer
2624-2644
0.001
Not Conserved
XLOC_004192
hsa-miR-17-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008673
Biotype: transcript isomorph
Gene id: XLOC_004192
Gene Name: XLOC_004192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2468-2491
0.014
1
6mer
3059-3077
0.004
3
6mer
628-654
0.004
2
6mer
2867-2883
0.003
1
6mer
1366-1388
0.002
0
6mer
1937-1956
0.002
1
XLOC_001584
hsa-miR-17-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002947
Biotype: transcript isomorph
Gene id: XLOC_001584
Gene Name: XLOC_001584
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-80
0.027
1
RP11-333J10.3
hsa-miR-17-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000620689
Biotype: sense_intronic
Gene id: ENSG00000277589
Gene Name: RP11-333J10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
651-675
0.027
0
LCMT1-AS2
hsa-miR-17-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1217-1242
0.011
1
7mer
1122-1147
0.007
1
7mer
945-972
0.005
0
6mer
675-689
0.004
0
CTD-2547L24.3
hsa-miR-17-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554096
Biotype: antisense
Gene id: ENSG00000258875
Gene Name: CTD-2547L24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1613-1637
0.016
0
6mer
1586-1604
0.006
1
6mer
1258-1280
0.005
3
MALAT1
hsa-miR-17-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000534336
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-520
0.014
1
7mer
5506-5522
0.004
2
6mer
2567-2581
0.003
4
6mer
5959-5974
0.003
5
6mer
887-903
0.002
Not Conserved
6mer
7721-7734
0.002
2
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