LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
RP11-415D17.3
hsa-miR-17-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415457
Biotype: antisense
Gene id: ENSG00000237174
Gene Name: RP11-415D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-462
0.028
9
LOC100128885
hsa-miR-17-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3112-3135
0.014
0
6mer
4287-4307
0.007
0
6mer
3307-3329
0.005
0
6mer
2646-2663
0.001
Not Conserved
RP11-363G2.4
hsa-miR-17-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000445646
Biotype: lincRNA
Gene id: ENSG00000229556
Gene Name: RP11-363G2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1803-1825
0.018
0
6mer
1177-1195
0.010
0
TMEM108-AS1
hsa-miR-17-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000505721
Biotype: antisense
Gene id: ENSG00000251011
Gene Name: TMEM108-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2180-2204
0.020
0
6mer
67-89
0.004
2
6mer
978-1000
0.004
1
XLOC_005514
hsa-miR-17-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012001
Biotype: transcript isomorph
Gene id: XLOC_005514
Gene Name: XLOC_005514
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1410-1434
0.010
1
6mer
2080-2084
0.005
Not Conserved
6mer
2375-2393
0.005
1
6mer
871-889
0.004
2
6mer
1174-1199
0.002
0
8mer
1192-1213
0.002
1
AC009501.4
hsa-miR-17-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000429952
Biotype: antisense
Gene id: ENSG00000231609
Gene Name: AC009501.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
451-476
0.020
4
6mer
224-243
0.007
7
XLOC_006857
hsa-miR-17-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014542
Biotype: transcript isomorph
Gene id: XLOC_006857
Gene Name: XLOC_006857
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1558-1583
0.028
Not Conserved
XLOC_009034
hsa-miR-17-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019201
Biotype: transcript isomorph
Gene id: XLOC_009034
Gene Name: XLOC_009034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-177
0.019
0
6mer
181-203
0.009
2
RP11-416O18.2
hsa-miR-17-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462382
Biotype: lincRNA
Gene id: ENSG00000240478
Gene Name: RP11-416O18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
175-191
0.028
5
RP4-620F22.2
hsa-miR-17-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000437128
Biotype: antisense
Gene id: ENSG00000237568
Gene Name: RP4-620F22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-123
0.028
0
XLOC_010216
hsa-miR-17-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020949
Biotype: transcript isomorph
Gene id: XLOC_010216
Gene Name: XLOC_010216
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
499-520
0.028
1
LINC01197
hsa-miR-17-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000555332
Biotype: lincRNA
Gene id: ENSG00000248441
Gene Name: LINC01197
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
913-934
0.025
3
6mer
661-684
0.002
1
RP11-672L10.1
hsa-miR-17-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000564872
Biotype: lincRNA
Gene id: ENSG00000259837
Gene Name: RP11-672L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-61
0.028
1
AC002454.1
hsa-miR-17-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_110086.1
Biotype: antisense
Gene id: NR_110086.1 (gene)
Gene Name: AC002454.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
756-780
0.017
8
6mer
834-854
0.011
7
LINC01125
hsa-miR-17-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596356
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-382
0.018
0
8mer
390-407
0.009
0
RGS5
hsa-miR-17-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000526176
Biotype: antisense
Gene id: ENSG00000232995
Gene Name: RGS5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-69
0.028
1
KB-208E9.1
hsa-miR-17-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000608615
Biotype: lincRNA
Gene id: ENSG00000272733
Gene Name: KB-208E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
762-775
0.028
0
XLOC_003234
hsa-miR-17-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006633
Biotype: transcript isomorph
Gene id: XLOC_003234
Gene Name: XLOC_003234
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
26-50
0.019
1
7mer
1762-1777
0.008
2
RP11-277P12.10
hsa-miR-17-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000539009
Biotype: lincRNA
Gene id: ENSG00000256288
Gene Name: RP11-277P12.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-75
0.028
0
RP5-890O3.9
hsa-miR-17-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444968
Biotype: sense_intronic
Gene id: ENSG00000240731
Gene Name: RP5-890O3.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-206
0.015
0
7mer
329-347
0.013
1
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