LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
STARD13-AS
hsa-miR-17-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608539
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-82
0.029
4
XLOC_010870
hsa-miR-17-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00023015
Biotype: transcript isomorph
Gene id: XLOC_010870
Gene Name: XLOC_010870
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
961-985
0.014
1
7mer
310-328
0.008
1
9mer
483-507
0.007
0
LAMTOR5-AS1
hsa-miR-17-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608253
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
825-845
0.029
1
RP11-161I10.1
hsa-miR-17-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417409
Biotype: lincRNA
Gene id: ENSG00000241505
Gene Name: RP11-161I10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-107
0.013
3
7mer
200-215
0.007
0
6mer
357-379
0.006
1
6mer
345-360
0.003
Not Conserved
XLOC_007710
hsa-miR-17-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015825
Biotype: transcript isomorph
Gene id: XLOC_007710
Gene Name: XLOC_007710
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1098-1116
0.029
0
RP11-967K21.1
hsa-miR-17-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617468
Biotype: antisense
Gene id: ENSG00000247934
Gene Name: RP11-967K21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-320
0.008
1
6mer
406-410
0.006
1
6mer
60-84
0.005
2
6mer
1141-1156
0.003
3
6mer
1950-1974
0.003
1
6mer
1817-1830
0.003
1
6mer
1605-1631
0.002
Not Conserved
RP11-400K9.4
hsa-miR-17-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000426023
Biotype: lincRNA
Gene id: ENSG00000237807
Gene Name: RP11-400K9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
358-379
0.024
1
6mer
2349-2365
0.005
0
RP11-764K9.1
hsa-miR-17-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000417843
Biotype: lincRNA
Gene id: ENSG00000225411
Gene Name: RP11-764K9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1098-1116
0.029
0
RP11-390E23.6
hsa-miR-17-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000607957
Biotype: antisense
Gene id: ENSG00000272686
Gene Name: RP11-390E23.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1019-1043
0.012
2
7mer
935-952
0.007
1
6mer
507-529
0.005
5
6mer
1494-1512
0.005
3
RP11-342H21.2
hsa-miR-17-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000456389
Biotype: antisense
Gene id: ENSG00000231080
Gene Name: RP11-342H21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
829-849
0.016
1
6mer
70-92
0.007
1
6mer
606-610
0.005
1
AC079163.1
hsa-miR-17-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418416
Biotype: lincRNA
Gene id: ENSG00000226218
Gene Name: AC079163.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-258
0.023
0
6mer
271-289
0.005
0
RP11-358N2.2
hsa-miR-17-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000612444
Biotype: lincRNA
Gene id: ENSG00000277692
Gene Name: RP11-358N2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-236
0.028
1
RP3-368A4.6
hsa-miR-17-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604070
Biotype: sense_intronic
Gene id: ENSG00000271533
Gene Name: RP3-368A4.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
117-135
0.006
1
6mer
3552-3572
0.005
0
6mer
292-311
0.004
1
6mer
716-732
0.004
1
6mer
370-394
0.003
0
7mer
2603-2624
0.003
2
6mer
1669-1694
0.003
1
AP003774.6
hsa-miR-17-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000457725
Biotype: lincRNA
Gene id: ENSG00000231680
Gene Name: AP003774.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
688-712
0.023
1
6mer
815-834
0.006
0
RP11-323I15.5
hsa-miR-17-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559246
Biotype: lincRNA
Gene id: ENSG00000259336
Gene Name: RP11-323I15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
632-646
0.020
0
7mer
1037-1064
0.008
1
RP11-126K15.1
hsa-miR-17-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000578740
Biotype: lincRNA
Gene id: ENSG00000265380
Gene Name: RP11-126K15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-29
0.028
4
XLOC_010715
hsa-miR-17-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022104
Biotype: transcript isomorph
Gene id: XLOC_010715
Gene Name: XLOC_010715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
747-770
0.028
0
PCAT19
hsa-miR-17-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597702
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
298-317
0.016
1
6mer
520-546
0.012
1
RP11-21I10.2
hsa-miR-17-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514608
Biotype: lincRNA
Gene id: ENSG00000249356
Gene Name: RP11-21I10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-173
0.028
0
LAMTOR5-AS1
hsa-miR-17-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000609709
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
703-723
0.024
1
6mer
475-496
0.004
1
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