LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
RP4-647J21.1
hsa-miR-17-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000568457
Biotype: sense_overlapping
Gene id: ENSG00000260997
Gene Name: RP4-647J21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1713-1729
0.011
1
9mer
910-930
0.008
1
7mer
980-997
0.007
1
7mer
738-754
0.004
1
RP11-702F3.1
hsa-miR-17-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528480
Biotype: lincRNA
Gene id: ENSG00000254653
Gene Name: RP11-702F3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
276-297
0.019
4
9mer
120-144
0.010
1
CTD-2313F11.1
hsa-miR-17-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607910
Biotype: antisense
Gene id: ENSG00000240535
Gene Name: CTD-2313F11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-460
0.029
1
SNORD109A
hsa-miR-17-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000604135
Biotype: sense_intronic
Gene id: ENSG00000270246
Gene Name: SNORD109A
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-276
0.022
1
6mer
291-305
0.008
1
CTD-2561J22.5
hsa-miR-17-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600469
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-49
0.022
1
6mer
550-563
0.007
0
XLOC_004805
hsa-miR-17-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010927
Biotype: transcript isomorph
Gene id: XLOC_004805
Gene Name: XLOC_004805
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
909-932
0.029
1
RP11-626G11.5
hsa-miR-17-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000576433
Biotype: antisense
Gene id: ENSG00000261465
Gene Name: RP11-626G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-235
0.029
4
STARD13-AS
hsa-miR-17-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609137
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-72
0.029
4
RP4-803J11.2
hsa-miR-17-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418348
Biotype: antisense
Gene id: ENSG00000237481
Gene Name: RP4-803J11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
228-251
0.019
0
6mer
197-213
0.005
1
6mer
178-201
0.005
1
AP006285.6
hsa-miR-17-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000436539
Biotype: lincRNA
Gene id: ENSG00000227306
Gene Name: AP006285.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-292
0.018
1
7mer
374-396
0.012
1
STARD13-AS
hsa-miR-17-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607944
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-66
0.029
4
CTC-546K23.1
hsa-miR-17-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000594690
Biotype: lincRNA
Gene id: ENSG00000229855
Gene Name: CTC-546K23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
492-517
0.017
4
6mer
589-616
0.007
3
6mer
454-469
0.005
0
AC010745.2
hsa-miR-17-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420404
Biotype: lincRNA
Gene id: ENSG00000228876
Gene Name: AC010745.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
688-713
0.029
1
STARD13-AS
hsa-miR-17-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609108
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-66
0.029
4
RP11-379B18.5
hsa-miR-17-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000594843
Biotype: lincRNA
Gene id: ENSG00000241288
Gene Name: RP11-379B18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-82
0.021
0
6mer
41-63
0.008
2
RP11-415D17.3
hsa-miR-17-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000588761
Biotype: antisense
Gene id: ENSG00000237174
Gene Name: RP11-415D17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
522-534
0.029
9
LINC01498
hsa-miR-17-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000502160
Biotype: antisense
Gene id: ENSG00000247213
Gene Name: LINC01498
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2668-2689
0.018
1
7mer
52-72
0.009
0
6mer
651-675
0.003
1
XLOC_013571
hsa-miR-17-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027955
Biotype: transcript isomorph
Gene id: XLOC_013571
Gene Name: XLOC_013571
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-197
0.029
1
XLOC_006293
hsa-miR-17-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012895
Biotype: transcript isomorph
Gene id: XLOC_006293
Gene Name: XLOC_006293
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1706-1728
0.009
1
6mer
51-64
0.008
1
6mer
2360-2371
0.006
2
6mer
378-393
0.004
1
6mer
747-768
0.002
0
CTD-3064H18.4
hsa-miR-17-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000316807
Biotype: antisense
Gene id: ENSG00000180458
Gene Name: CTD-3064H18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
67-86
0.014
1
6mer
325-344
0.010
1
6mer
2569-2589
0.006
1
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