LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
RP11-557H15.3
hsa-miR-17-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422736
Biotype: lincRNA
Gene id: ENSG00000231971
Gene Name: RP11-557H15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-309
0.023
3
6mer
80-101
0.007
3
STARD13-AS
hsa-miR-17-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609233
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
73-89
0.030
4
CCDC39-AS1
hsa-miR-17-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000495357
Biotype: antisense
Gene id: ENSG00000243187
Gene Name: CCDC39-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
148-161
0.030
6
STARD13-AS
hsa-miR-17-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608175
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
33-49
0.030
4
RP11-643A5.2
hsa-miR-17-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558920
Biotype: lincRNA
Gene id: ENSG00000259669
Gene Name: RP11-643A5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-24
0.023
2
6mer
41-59
0.007
1
AC090587.2
hsa-miR-17-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000507938
Biotype: sense_overlapping
Gene id: ENSG00000250404
Gene Name: AC090587.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
734-757
0.009
9
9mer
2434-2458
0.007
1
9mer
1349-1369
0.006
1
6mer
680-704
0.004
8
6mer
523-547
0.003
3
RP11-774O3.3
hsa-miR-17-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505448
Biotype: lincRNA
Gene id: ENSG00000251615
Gene Name: RP11-774O3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3042-3059
0.007
1
6mer
195-212
0.006
1
6mer
502-526
0.005
0
6mer
2156-2177
0.001
Not Conserved
6mer
1550-1560
0.001
1
6mer
2065-2089
0.001
0
6mer
2014-2038
0.001
0
6mer
1805-1825
0.001
0
6mer
1499-1509
0.001
1
6mer
1652-1673
0.001
1
6mer
1963-1984
0.001
0
6mer
1754-1774
0.001
1
6mer
1703-1727
0.001
0
LINC00520
hsa-miR-17-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000560267
Biotype: lincRNA
Gene id: ENSG00000258791
Gene Name: LINC00520
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Kidney Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-84
0.030
1
RP11-557H15.4
hsa-miR-17-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607531
Biotype: lincRNA
Gene id: ENSG00000232310
Gene Name: RP11-557H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-170
0.026
Not Conserved
6mer
605-630
0.004
1
XLOC_009233
hsa-miR-17-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019409
Biotype: transcript isomorph
Gene id: XLOC_009233
Gene Name: XLOC_009233
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
297-321
0.007
1
9mer
1754-1778
0.006
0
7mer
2403-2428
0.006
0
6mer
220-241
0.005
1
6mer
578-605
0.004
0
6mer
639-665
0.002
2
XLOC_010474
hsa-miR-17-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021875
Biotype: transcript isomorph
Gene id: XLOC_010474
Gene Name: XLOC_010474
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
426-444
0.030
1
STARD13-AS
hsa-miR-17-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000608205
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-54
0.030
4
RP11-344E13.3
hsa-miR-17-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584433
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
374-391
0.030
0
XLOC_014420
hsa-miR-17-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029355
Biotype: transcript isomorph
Gene id: XLOC_014420
Gene Name: XLOC_014420
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
537-557
0.014
0
6mer
1633-1646
0.007
4
7mer
1197-1214
0.004
0
6mer
815-834
0.004
1
XLOC_002770
hsa-miR-17-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006165
Biotype: transcript isomorph
Gene id: XLOC_002770
Gene Name: XLOC_002770
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
706-731
0.030
5
AC000036.4
hsa-miR-17-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000449652
Biotype: antisense
Gene id: ENSG00000225929
Gene Name: AC000036.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
543-563
0.014
0
6mer
1639-1652
0.007
4
7mer
1203-1220
0.004
0
6mer
821-840
0.004
1
STARD13-AS
hsa-miR-17-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000609167
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
34-50
0.030
4
ATP1A1OS
hsa-miR-17-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027646.1
Biotype: antisense
Gene id: NR_027646.1 (gene)
Gene Name: ATP1A1OS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
29-52
0.030
4
XLOC_009855
hsa-miR-17-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020235
Biotype: transcript isomorph
Gene id: XLOC_009855
Gene Name: XLOC_009855
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
914-936
0.023
1
6mer
276-302
0.006
0
RP11-206L10.3
hsa-miR-17-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416385
Biotype: lincRNA
Gene id: ENSG00000235373
Gene Name: RP11-206L10.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3887-3898
0.014
0
9mer
86-106
0.009
Not Conserved
6mer
3814-3829
0.006
0
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