LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
AC092669.6
hsa-miR-17-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000412313
Biotype: lincRNA
Gene id: ENSG00000225815
Gene Name: AC092669.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
884-908
0.032
4
FAM182A
hsa-miR-17-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000376398
Biotype: lincRNA
Gene id: ENSG00000125804
Gene Name: FAM182A
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-62
0.023
1
7mer
4682-4709
0.006
0
7mer
1873-1899
0.002
Not Conserved
6mer
2107-2131
0.001
Not Conserved
STK4-AS1
hsa-miR-17-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000434401
Biotype: lincRNA
Gene id: ENSG00000227477
Gene Name: STK4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
995-1018
0.017
1
8mer
498-522
0.008
1
6mer
45-69
0.007
1
RP11-631N16.2
hsa-miR-17-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550290
Biotype: lincRNA
Gene id: ENSG00000257354
Gene Name: RP11-631N16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1089-1107
0.018
0
8mer
3833-3852
0.010
2
6mer
3221-3244
0.002
1
6mer
7356-7375
0.002
0
XLOC_005703
hsa-miR-17-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012157
Biotype: transcript isomorph
Gene id: XLOC_005703
Gene Name: XLOC_005703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
75-88
0.032
1
XLOC_003546
hsa-miR-17-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007535
Biotype: transcript isomorph
Gene id: XLOC_003546
Gene Name: XLOC_003546
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2545-2562
0.010
Not Conserved
6mer
54-74
0.008
4
6mer
590-603
0.006
1
6mer
2829-2847
0.004
1
6mer
902-920
0.003
1
6mer
1131-1155
0.002
1
XLOC_013293
hsa-miR-17-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027290
Biotype: transcript isomorph
Gene id: XLOC_013293
Gene Name: XLOC_013293
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-33
0.032
3
AC096669.1
hsa-miR-17-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422203
Biotype: lincRNA
Gene id: ENSG00000225588
Gene Name: AC096669.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
553-577
0.032
0
XLOC_003130
hsa-miR-17-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007175
Biotype: transcript isomorph
Gene id: XLOC_003130
Gene Name: XLOC_003130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-35
0.032
0
RP11-145G20.1
hsa-miR-17-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000522173
Biotype: lincRNA
Gene id: ENSG00000248510
Gene Name: RP11-145G20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
144-165
0.020
4
6mer
526-549
0.005
1
6mer
372-387
0.004
Not Conserved
6mer
624-648
0.003
1
XLOC_010463
hsa-miR-17-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021867
Biotype: transcript isomorph
Gene id: XLOC_010463
Gene Name: XLOC_010463
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
648-666
0.006
2
7mer
10980-10999
0.006
1
6mer
4556-4577
0.003
5
9mer
6754-6776
0.003
1
6mer
10675-10701
0.003
2
6mer
7444-7471
0.003
5
6mer
3759-3777
0.002
3
6mer
2135-2158
0.002
1
6mer
10823-10844
0.002
1
6mer
9996-10014
0.002
1
6mer
7518-7536
0.001
Not Conserved
LOC401324
hsa-miR-17-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_038864.1
Biotype: lincRNA
Gene id: NR_038864.1 (gene)
Gene Name: LOC401324
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
313-340
0.024
0
7mer
2136-2153
0.005
8
6mer
2697-2721
0.003
1
XLOC_011715
hsa-miR-17-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024390
Biotype: transcript isomorph
Gene id: XLOC_011715
Gene Name: XLOC_011715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3508-3531
0.017
1
8mer
3350-3372
0.013
1
6mer
2341-2365
0.002
2
XLOC_005413
hsa-miR-17-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011912
Biotype: transcript isomorph
Gene id: XLOC_005413
Gene Name: XLOC_005413
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-425
0.032
0
LINC00948
hsa-miR-17-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000612853
Biotype: retained_intron
Gene id: ENSG00000227877
Gene Name: LINC00948
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
484-503
0.018
6
7mer
243-266
0.014
5
XLOC_005050
hsa-miR-17-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010530
Biotype: transcript isomorph
Gene id: XLOC_005050
Gene Name: XLOC_005050
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
121-144
0.032
1
XLOC_001066
hsa-miR-17-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001706
Biotype: transcript isomorph
Gene id: XLOC_001066
Gene Name: XLOC_001066
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
431-448
0.023
0
7mer
391-407
0.008
0
XLOC_007098
hsa-miR-17-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014518
Biotype: transcript isomorph
Gene id: XLOC_007098
Gene Name: XLOC_007098
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
113-124
0.009
1
7mer
141-153
0.008
1
6mer
2274-2293
0.004
1
6mer
1473-1498
0.003
2
6mer
504-521
0.002
0
6mer
1376-1401
0.001
0
6mer
1240-1266
0.001
1
6mer
1202-1228
0.001
1
6mer
1164-1190
0.001
0
RP11-327L9.1
hsa-miR-17-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000622930
Biotype: lincRNA
Gene id: ENSG00000280366
Gene Name: RP11-327L9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-399
0.023
7
7mer
483-496
0.009
2
SNHG24
hsa-miR-17-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554693
Biotype: lincRNA
Gene id: ENSG00000271417
Gene Name: SNHG24
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
881-900
0.017
1
7mer
712-729
0.014
0
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