LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
RP4-547N15.3
hsa-miR-17-5p
0.820
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000621423
Biotype: sense_intronic
Gene id: ENSG00000275678
Gene Name: RP4-547N15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
693-717
0.013
1
7mer
391-402
0.010
1
7mer
968-985
0.008
1
6mer
1656-1679
0.005
2
RP11-216M21.7
hsa-miR-17-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
736-758
0.016
0
6mer
2282-2302
0.011
0
6mer
2140-2165
0.008
0
CTC-369A16.3
hsa-miR-17-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510853
Biotype: lincRNA
Gene id: ENSG00000251662
Gene Name: CTC-369A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-116
0.028
5
6mer
552-565
0.007
1
CTD-2561J22.5
hsa-miR-17-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594557
Biotype: retained_intron
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
497-501
0.010
1
7mer
2563-2584
0.006
1
7mer
1013-1035
0.005
1
6mer
4074-4087
0.004
0
6mer
3661-3684
0.003
0
6mer
2219-2234
0.003
1
6mer
3535-3559
0.002
0
6mer
2411-2424
0.001
0
RP11-303E16.2
hsa-miR-17-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566639
Biotype: sense_intronic
Gene id: ENSG00000261061
Gene Name: RP11-303E16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10-33
0.030
0
7mer
314-319
0.006
Not Conserved
MAGI1-IT1
hsa-miR-17-5p
0.819
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460754
Biotype: sense_intronic
Gene id: ENSG00000272610
Gene Name: MAGI1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
361-382
0.029
6
6mer
589-606
0.004
1
6mer
1177-1195
0.003
1
RP1-86D1.2
hsa-miR-17-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000434560
Biotype: sense_intronic
Gene id: ENSG00000228972
Gene Name: RP1-86D1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-278
0.013
0
7mer
1752-1771
0.012
0
6mer
1692-1715
0.008
3
6mer
1064-1085
0.003
Not Conserved
RP11-407B7.1
hsa-miR-17-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432154
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2054-2076
0.021
2
6mer
982-1002
0.004
0
7mer
2170-2193
0.003
1
6mer
765-787
0.003
2
6mer
877-895
0.003
0
XLOC_005193
hsa-miR-17-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011715
Biotype: transcript isomorph
Gene id: XLOC_005193
Gene Name: XLOC_005193
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
343-362
0.035
1
LAMTOR5-AS1
hsa-miR-17-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608602
Biotype: antisense
Gene id: ENSG00000224699
Gene Name: LAMTOR5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
930-950
0.031
1
6mer
854-875
0.005
1
XLOC_013263
hsa-miR-17-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027223
Biotype: transcript isomorph
Gene id: XLOC_013263
Gene Name: XLOC_013263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
14-38
0.018
0
6mer
3256-3274
0.008
0
7mer
496-515
0.007
0
7mer
1369-1395
0.003
0
XLOC_005753
hsa-miR-17-5p
0.818
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012196
Biotype: transcript isomorph
Gene id: XLOC_005753
Gene Name: XLOC_005753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
4012-4035
0.018
Not Conserved
6mer
20-46
0.005
1
7mer
623-645
0.005
0
6mer
1567-1583
0.003
2
6mer
2099-2121
0.002
0
6mer
2965-2991
0.002
2
6mer
2468-2493
0.002
0
AC114776.3
hsa-miR-17-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
53-77
0.017
0
6mer
3571-3588
0.010
1
9mer
1060-1084
0.008
0
XIST
hsa-miR-17-5p
0.817
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9249-9262
0.006
3
7mer
2306-2319
0.006
1
6mer
18455-18475
0.005
2
7mer
8828-8853
0.004
1
9mer
14002-14026
0.004
1
7mer
12500-12516
0.003
0
7mer
9094-9109
0.003
3
6mer
16889-16910
0.002
Not Conserved
6mer
8464-8479
0.002
1
6mer
13190-13207
0.001
1
XLOC_002616
hsa-miR-17-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005990
Biotype: transcript isomorph
Gene id: XLOC_002616
Gene Name: XLOC_002616
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-32
0.027
1
6mer
200-221
0.008
2
LINC01482
hsa-miR-17-5p
0.816
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587999
Biotype: lincRNA
Gene id: ENSG00000267659
Gene Name: LINC01482
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
432-455
0.014
2
6mer
515-532
0.008
1
6mer
521-538
0.007
0
6mer
495-519
0.006
0
RP11-242C19.2
hsa-miR-17-5p
0.815
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000497961
Biotype: sense_intronic
Gene id: ENSG00000241886
Gene Name: RP11-242C19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-476
0.028
0
6mer
115-129
0.007
2
XLOC_006497
hsa-miR-17-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00012913
Biotype: transcript isomorph
Gene id: XLOC_006497
Gene Name: XLOC_006497
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4976-4992
0.028
9
7mer
338-364
0.007
1
MIR181A1HG
hsa-miR-17-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_040073.1
Biotype: lincRNA
Gene id: NR_040073.1 (gene)
Gene Name: MIR181A1HG
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
520-535
0.035
3
RP11-982M15.5
hsa-miR-17-5p
0.813
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555524
Biotype: antisense
Gene id: ENSG00000258858
Gene Name: RP11-982M15.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
676-697
0.035
4
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