LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
XLOC_001591
hsa-miR-17-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003793
Biotype: transcript isomorph
Gene id: XLOC_001591
Gene Name: XLOC_001591
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
89-113
0.032
1
7mer
401-410
0.009
1
SMC2-AS1
hsa-miR-17-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000603487
Biotype: lincRNA
Gene id: ENSG00000270332
Gene Name: SMC2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6914-6936
0.025
1
6mer
6986-7012
0.005
0
6mer
6148-6160
0.003
1
6mer
4386-4399
0.002
1
6mer
1786-1812
0.002
1
6mer
2428-2446
0.002
1
6mer
4215-4231
0.001
1
6mer
2281-2305
0.001
1
RP4-717I23.3
hsa-miR-17-5p
0.863
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429859
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
287-307
0.023
3
7mer
52-72
0.018
8
RP11-798L4.1
hsa-miR-17-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000381217
Biotype: lincRNA
Gene id: ENSG00000205682
Gene Name: RP11-798L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1779-1805
0.024
0
9mer
421-445
0.011
0
6mer
694-717
0.003
1
6mer
856-879
0.002
0
KLHL7-AS1
hsa-miR-17-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000419813
Biotype: lincRNA
Gene id: ENSG00000230658
Gene Name: KLHL7-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-636
0.033
1
6mer
1816-1834
0.004
0
6mer
869-890
0.004
1
AP000330.8
hsa-miR-17-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_038885.1
Biotype: lincRNA
Gene id: NR_038885.1 (gene)
Gene Name: AP000330.8
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
673-700
0.010
1
7mer
1620-1634
0.006
1
6mer
2141-2159
0.005
2
6mer
57-81
0.005
0
7mer
2283-2307
0.004
1
9mer
1539-1560
0.003
0
6mer
1854-1876
0.003
1
6mer
1398-1415
0.002
1
6mer
1838-1860
0.002
0
GS1-358P8.4
hsa-miR-17-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568479
Biotype: sense_overlapping
Gene id: ENSG00000260822
Gene Name: GS1-358P8.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1925-1940
0.017
6
6mer
4715-4739
0.008
6
7mer
4161-4166
0.004
0
6mer
311-329
0.004
1
6mer
4417-4444
0.003
1
6mer
3598-3613
0.002
1
6mer
2241-2255
0.002
1
6mer
1113-1131
0.001
0
LINC00293
hsa-miR-17-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
804-829
0.022
1
7mer
528-554
0.019
0
XLOC_001716
hsa-miR-17-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003910
Biotype: transcript isomorph
Gene id: XLOC_001716
Gene Name: XLOC_001716
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
569-592
0.027
2
7mer
143-162
0.013
0
LINC01024
hsa-miR-17-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522747
Biotype: antisense
Gene id: ENSG00000245146
Gene Name: LINC01024
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
122-141
0.021
1
8mer
805-818
0.013
0
6mer
236-263
0.006
2
RP4-671O14.6
hsa-miR-17-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2751-2771
0.007
1
7mer
17-40
0.006
1
9mer
10525-10549
0.005
0
9mer
11041-11065
0.005
1
8mer
11705-11722
0.004
0
9mer
11392-11416
0.003
0
9mer
5167-5191
0.003
1
6mer
6516-6541
0.002
0
6mer
7078-7099
0.002
0
6mer
3389-3414
0.002
1
6mer
12111-12131
0.002
1
6mer
9420-9445
0.001
1
6mer
3095-3112
0.001
1
RP11-278I4.2
hsa-miR-17-5p
0.859
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518362
Biotype: antisense
Gene id: ENSG00000254278
Gene Name: RP11-278I4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
934-956
0.034
7
6mer
859-880
0.003
1
6mer
752-773
0.003
3
RP11-266K4.13
hsa-miR-17-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000611627
Biotype: lincRNA
Gene id: ENSG00000276417
Gene Name: RP11-266K4.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
351-369
0.016
1
7mer
33-60
0.014
0
6mer
1008-1030
0.009
0
NOP14-AS1
hsa-miR-17-5p
0.858
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507702
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-95
0.040
0
XLOC_001963
hsa-miR-17-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004113
Biotype: transcript isomorph
Gene id: XLOC_001963
Gene Name: XLOC_001963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
533-557
0.023
3
7mer
888-903
0.008
1
6mer
324-341
0.005
1
6mer
663-672
0.003
2
XLOC_003808
hsa-miR-17-5p
0.856
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007688
Biotype: transcript isomorph
Gene id: XLOC_003808
Gene Name: XLOC_003808
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
8978-8991
0.010
2
6mer
8733-8752
0.008
4
7mer
6130-6149
0.005
1
9mer
4672-4696
0.003
1
6mer
8252-8278
0.003
3
6mer
6762-6778
0.003
2
9mer
1436-1460
0.003
0
9mer
1948-1972
0.002
0
6mer
6441-6461
0.002
1
6mer
5499-5521
0.001
0
RP5-1039K5.18
hsa-miR-17-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609265
Biotype: lincRNA
Gene id: ENSG00000273214
Gene Name: RP5-1039K5.18
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-203
0.028
1
7mer
632-651
0.012
0
RP11-159D12.2
hsa-miR-17-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577267
Biotype: lincRNA
Gene id: ENSG00000264112
Gene Name: RP11-159D12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3979-4002
0.023
0
7mer
3675-3693
0.009
1
7mer
2207-2219
0.004
3
6mer
3100-3118
0.002
1
6mer
2479-2496
0.002
1
XLOC_012665
hsa-miR-17-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026191
Biotype: transcript isomorph
Gene id: XLOC_012665
Gene Name: XLOC_012665
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
377-401
0.030
6
6mer
345-368
0.010
8
RP11-639B1.1
hsa-miR-17-5p
0.855
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000490465
Biotype: lincRNA
Gene id: ENSG00000241131
Gene Name: RP11-639B1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
252-270
0.040
2
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