LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
RP1-228P16.8
hsa-miR-17-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000616571
Biotype: lincRNA
Gene id: ENSG00000276814
Gene Name: RP1-228P16.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-238
0.042
7
MIR181A1HG
hsa-miR-17-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436880
Biotype: lincRNA
Gene id: ENSG00000229989
Gene Name: MIR181A1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2224-2239
0.035
3
6mer
173-197
0.005
1
6mer
978-1003
0.002
2
RP11-698N11.2
hsa-miR-17-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525363
Biotype: antisense
Gene id: ENSG00000254919
Gene Name: RP11-698N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
332-358
0.042
2
XLOC_001148
hsa-miR-17-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000111
Biotype: transcript isomorph
Gene id: XLOC_001148
Gene Name: XLOC_001148
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2196-2211
0.035
3
6mer
145-169
0.005
1
6mer
950-975
0.002
2
RP11-669C19.1
hsa-miR-17-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000566804
Biotype: lincRNA
Gene id: ENSG00000261734
Gene Name: RP11-669C19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
630-641
0.018
4
7mer
1253-1278
0.009
1
7mer
1524-1542
0.008
2
6mer
327-340
0.007
1
RP11-471B22.3
hsa-miR-17-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000615251
Biotype: lincRNA
Gene id: ENSG00000275198
Gene Name: RP11-471B22.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4015-4030
0.015
10
8mer
446-473
0.014
2
6mer
4109-4133
0.006
6
9mer
2561-2585
0.003
0
6mer
3092-3107
0.003
4
6mer
1197-1222
0.002
1
XLOC_004053
hsa-miR-17-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008556
Biotype: transcript isomorph
Gene id: XLOC_004053
Gene Name: XLOC_004053
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
538-561
0.019
Not Conserved
7mer
571-589
0.009
0
6mer
2873-2898
0.008
1
6mer
2495-2499
0.004
1
7mer
711-729
0.002
Not Conserved
RP11-61L19.1
hsa-miR-17-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000580891
Biotype: sense_intronic
Gene id: ENSG00000266805
Gene Name: RP11-61L19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3332-3342
0.022
1
9mer
3375-3399
0.015
1
6mer
2056-2070
0.003
1
6mer
1577-1596
0.002
2
XLOC_011604
hsa-miR-17-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023827
Biotype: transcript isomorph
Gene id: XLOC_011604
Gene Name: XLOC_011604
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
309-334
0.039
1
6mer
1325-1341
0.002
1
XLOC_012551
hsa-miR-17-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025730
Biotype: transcript isomorph
Gene id: XLOC_012551
Gene Name: XLOC_012551
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
232-253
0.037
3
6mer
39-60
0.004
0
RP4-717I23.3
hsa-miR-17-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446528
Biotype: antisense
Gene id: ENSG00000223745
Gene Name: RP4-717I23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
318-338
0.023
3
7mer
83-103
0.019
8
XLOC_005136
hsa-miR-17-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012402
Biotype: transcript isomorph
Gene id: XLOC_005136
Gene Name: XLOC_005136
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
355-372
0.041
2
CTD-2135D7.2
hsa-miR-17-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575137
Biotype: antisense
Gene id: ENSG00000262732
Gene Name: CTD-2135D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
294-311
0.018
1
6mer
261-271
0.006
4
7mer
709-735
0.005
2
7mer
1672-1687
0.004
0
6mer
944-956
0.003
1
7mer
3550-3574
0.003
6
6mer
1923-1948
0.002
2
6mer
1706-1726
0.001
1
CTD-2524L6.3
hsa-miR-17-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563041
Biotype: antisense
Gene id: ENSG00000260037
Gene Name: CTD-2524L6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
549-570
0.041
7
AC105339.1
hsa-miR-17-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559535
Biotype: lincRNA
Gene id: ENSG00000228141
Gene Name: AC105339.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-193
0.024
4
7mer
356-378
0.017
6
LINC01135
hsa-miR-17-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_034015.1
Biotype: lincRNA
Gene id: NR_034015.1 (gene)
Gene Name: LINC01135
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
752-776
0.038
4
6mer
652-677
0.003
0
HAND2-AS1
hsa-miR-17-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507062
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3428-3448
0.022
8
8mer
1780-1804
0.009
7
6mer
1506-1525
0.004
6
6mer
330-350
0.003
1
6mer
1758-1783
0.001
Not Conserved
6mer
1585-1604
0.001
4
RP11-99A1.2
hsa-miR-17-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000590604
Biotype: lincRNA
Gene id: ENSG00000267311
Gene Name: RP11-99A1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
967-987
0.037
1
6mer
471-490
0.004
2
XLOC_004581
hsa-miR-17-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009526
Biotype: transcript isomorph
Gene id: XLOC_004581
Gene Name: XLOC_004581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-158
0.026
2
8mer
1006-1022
0.015
1
RP1-309I22.2
hsa-miR-17-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
26963-26987
0.009
0
6mer
26268-26284
0.005
11
7mer
4386-4402
0.004
0
6mer
24417-24437
0.003
6
7mer
15588-15598
0.003
2
7mer
2710-2733
0.002
0
6mer
16839-16856
0.002
3
6mer
19206-19228
0.002
1
7mer
14433-14453
0.002
2
6mer
9295-9311
0.002
3
7mer
10708-10732
0.002
1
6mer
27591-27608
0.001
1
6mer
21087-21104
0.001
1
6mer
26517-26533
0.001
1
6mer
20820-20842
0.001
0
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