LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-17-5p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-171I2.2
hsa-miR-17-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000603521
Biotype: antisense
Gene id: ENSG00000270574
Gene Name: RP11-171I2.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1529-1541
0.024
6
7mer
711-725
0.008
3
6mer
233-251
0.008
6
6mer
1024-1032
0.004
6
RP11-464F9.1
hsa-miR-17-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000399449
Biotype: processed_transcript
Gene id: ENSG00000242288
Gene Name: RP11-464F9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3458-3483
0.031
2
8mer
1097-1123
0.012
3
XLOC_000695
hsa-miR-17-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001384
Biotype: transcript isomorph
Gene id: XLOC_000695
Gene Name: XLOC_000695
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
299-323
0.019
1
9mer
2876-2894
0.007
1
6mer
2993-3010
0.006
3
6mer
2928-2952
0.004
Not Conserved
8mer
2004-2024
0.004
0
6mer
864-881
0.003
2
LINC00846
hsa-miR-17-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000334165
Biotype: lincRNA
Gene id: ENSG00000186842
Gene Name: LINC00846
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
282-306
0.044
1
AC144831.1
hsa-miR-17-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573312
Biotype: lincRNA
Gene id: ENSG00000261888
Gene Name: AC144831.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2350-2373
0.028
1
9mer
373-395
0.010
0
6mer
2071-2096
0.005
1
AC078883.4
hsa-miR-17-5p
0.882
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441212
Biotype: antisense
Gene id: ENSG00000226963
Gene Name: AC078883.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
194-211
0.044
5
NPTN-IT1
hsa-miR-17-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_103844.1
Biotype: sense
Gene id: NR_103844.1 (gene)
Gene Name: NPTN-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
347-367
0.040
1
6mer
361-380
0.003
0
RP11-315E17.1
hsa-miR-17-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550272
Biotype: antisense
Gene id: ENSG00000258162
Gene Name: RP11-315E17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
674-698
0.043
0
RP11-242F24.1
hsa-miR-17-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432429
Biotype: lincRNA
Gene id: ENSG00000228750
Gene Name: RP11-242F24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1153-1176
0.023
0
9mer
1368-1392
0.012
0
6mer
39-62
0.008
6
CKMT2-AS1
hsa-miR-17-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000501927
Biotype: antisense
Gene id: ENSG00000247572
Gene Name: CKMT2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-218
0.023
1
9mer
586-599
0.018
0
6mer
1921-1941
0.002
1
CTC-457E21.9
hsa-miR-17-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601860
Biotype: antisense
Gene id: ENSG00000268981
Gene Name: CTC-457E21.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5-18
0.039
0
6mer
213-239
0.004
Not Conserved
MIR181A1HG
hsa-miR-17-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432296
Biotype: lincRNA
Gene id: ENSG00000229989
Gene Name: MIR181A1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Placenta Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
865-880
0.043
3
XLOC_011038
hsa-miR-17-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022755
Biotype: transcript isomorph
Gene id: XLOC_011038
Gene Name: XLOC_011038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
268-283
0.043
10
DNMBP-AS1
hsa-miR-17-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000434409
Biotype: antisense
Gene id: ENSG00000227695
Gene Name: DNMBP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2010-2023
0.029
1
9mer
1222-1246
0.005
1
9mer
1520-1544
0.005
0
6mer
173-194
0.003
2
LL22NC03-22D1.1
hsa-miR-17-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
104-123
0.007
3
9mer
3878-3898
0.003
1
6mer
13366-13385
0.003
5
6mer
18736-18754
0.003
2
6mer
15387-15412
0.003
1
7mer
17702-17723
0.002
0
6mer
28091-28107
0.002
1
6mer
4574-4598
0.002
1
6mer
7767-7779
0.002
1
6mer
18523-18537
0.002
1
6mer
17233-17250
0.002
0
6mer
10004-10013
0.002
0
6mer
13861-13879
0.002
2
6mer
23962-23970
0.001
0
6mer
2471-2497
0.001
0
6mer
8459-8473
0.001
Not Conserved
6mer
1341-1363
0.001
0
6mer
27146-27162
0.001
Not Conserved
6mer
18776-18801
0.001
0
RP11-757G1.6
hsa-miR-17-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2814-2831
0.020
0
6mer
911-927
0.009
0
6mer
1679-1694
0.007
0
6mer
1245-1271
0.006
0
LINC01085
hsa-miR-17-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000502759
Biotype: lincRNA
Gene id: ENSG00000248698
Gene Name: LINC01085
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1734-1741
0.031
2
6mer
294-312
0.006
1
6mer
635-659
0.005
2
AC018359.1
hsa-miR-17-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000424786
Biotype: lincRNA
Gene id: ENSG00000226320
Gene Name: AC018359.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
519-545
0.026
0
7mer
129-152
0.016
0
RP11-96C23.14
hsa-miR-17-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444180
Biotype: processed_transcript
Gene id: ENSG00000272508
Gene Name: RP11-96C23.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
21-47
0.036
1
6mer
389-405
0.003
0
6mer
646-671
0.003
1
XLOC_001564
hsa-miR-17-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003762
Biotype: transcript isomorph
Gene id: XLOC_001564
Gene Name: XLOC_001564
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
902-928
0.033
0
6mer
653-677
0.009
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept