LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-17-5p


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Gene
miRNA
Score
DIANA Links
RP11-162A12.4
hsa-miR-17-5p
0.900
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000622010
Biotype: lincRNA
Gene id: ENSG00000278107
Gene Name: RP11-162A12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
194-209
0.034
1
7mer
142-166
0.012
0
RP11-374M1.2
hsa-miR-17-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439760
Biotype: lincRNA
Gene id: ENSG00000231527
Gene Name: RP11-374M1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
154-174
0.047
0
XLOC_005160
hsa-miR-17-5p
0.899
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011687
Biotype: transcript isomorph
Gene id: XLOC_005160
Gene Name: XLOC_005160
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-76
0.038
1
6mer
5488-5510
0.006
1
6mer
3463-3486
0.002
Not Conserved
RP5-963E22.5
hsa-miR-17-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000567259
Biotype: lincRNA
Gene id: ENSG00000260416
Gene Name: RP5-963E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-93
0.024
1
7mer
84-101
0.015
1
8mer
1489-1507
0.005
Not Conserved
6mer
1396-1413
0.003
Not Conserved
RP11-1299A16.3
hsa-miR-17-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000569927
Biotype: antisense
Gene id: ENSG00000260641
Gene Name: RP11-1299A16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
739-759
0.021
3
6mer
5576-5592
0.012
6
6mer
5185-5204
0.007
5
6mer
989-1010
0.003
3
6mer
4522-4538
0.002
1
AC105339.1
hsa-miR-17-5p
0.898
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000440089
Biotype: lincRNA
Gene id: ENSG00000228141
Gene Name: AC105339.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
171-193
0.024
4
7mer
471-493
0.017
6
6mer
958-974
0.005
1
NCKAP5-IT1
hsa-miR-17-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416437
Biotype: sense_intronic
Gene id: ENSG00000232474
Gene Name: NCKAP5-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
366-390
0.046
5
FLJ31306
hsa-miR-17-5p
0.897
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555707
Biotype: antisense
Gene id: ENSG00000257621
Gene Name: FLJ31306
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-170
0.038
1
9mer
1376-1400
0.005
0
6mer
917-940
0.002
1
6mer
909-922
0.001
1
FLJ42627
hsa-miR-17-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563449
Biotype: antisense
Gene id: ENSG00000261613
Gene Name: FLJ42627
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
56-73
0.046
2
XLOC_003427
hsa-miR-17-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007460
Biotype: transcript isomorph
Gene id: XLOC_003427
Gene Name: XLOC_003427
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
768-788
0.025
0
8mer
316-341
0.020
1
RP11-1L9.1
hsa-miR-17-5p
0.896
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000420403
Biotype: lincRNA
Gene id: ENSG00000226434
Gene Name: RP11-1L9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
291-310
0.046
1
CTD-2095E4.5
hsa-miR-17-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000613639
Biotype: lincRNA
Gene id: ENSG00000277511
Gene Name: CTD-2095E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
813-829
0.046
0
XLOC_007141
hsa-miR-17-5p
0.895
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015064
Biotype: transcript isomorph
Gene id: XLOC_007141
Gene Name: XLOC_007141
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
838-856
0.046
0
MEG3
hsa-miR-17-5p
0.894
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000523671
Biotype: lincRNA
Gene id: ENSG00000214548
Gene Name: MEG3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
504-529
0.037
4
6mer
2023-2039
0.005
3
6mer
1809-1826
0.003
1
RP11-532N4.2
hsa-miR-17-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000587106
Biotype: antisense
Gene id: ENSG00000235535
Gene Name: RP11-532N4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2841-2863
0.027
10
7mer
2515-2540
0.007
0
7mer
1170-1193
0.006
1
6mer
679-689
0.003
2
6mer
1835-1852
0.002
0
NOP14-AS1
hsa-miR-17-5p
0.893
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512802
Biotype: antisense
Gene id: ENSG00000249673
Gene Name: NOP14-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-39
0.045
0
CTC-369A16.2
hsa-miR-17-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510004
Biotype: lincRNA
Gene id: ENSG00000251421
Gene Name: CTC-369A16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
438-460
0.024
5
7mer
95-113
0.021
3
XLOC_002542
hsa-miR-17-5p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004628
Biotype: transcript isomorph
Gene id: XLOC_002542
Gene Name: XLOC_002542
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
617-630
0.039
2
7mer
383-394
0.006
0
AC138430.4
hsa-miR-17-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586064
Biotype: retained_intron
Gene id: ENSG00000267629
Gene Name: AC138430.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-160
0.025
1
8mer
855-872
0.020
3
XLOC_011623
hsa-miR-17-5p
0.891
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024244
Biotype: transcript isomorph
Gene id: XLOC_011623
Gene Name: XLOC_011623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-17-5p
Sequence: caaagugcuuacagugcagguag
MirBase ID: MIMAT0000070
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1784-1801
0.045
2
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