LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP11-171I2.1
hsa-miR-15a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590024
Biotype: antisense
Gene id: ENSG00000267784
Gene Name: RP11-171I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2557-2576
0.009
7
7mer
2434-2458
0.008
5
6mer
926-951
0.004
10
6mer
810-833
0.003
7
6mer
1653-1678
0.002
2
RP11-78A19.3
hsa-miR-15a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586474
Biotype: antisense
Gene id: ENSG00000267165
Gene Name: RP11-78A19.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
139-162
0.025
1
XLOC_012200
hsa-miR-15a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025387
Biotype: transcript isomorph
Gene id: XLOC_012200
Gene Name: XLOC_012200
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-155
0.025
1
RP11-30P6.6
hsa-miR-15a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000455071
Biotype: lincRNA
Gene id: ENSG00000234155
Gene Name: RP11-30P6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2435-2460
0.017
2
6mer
1622-1636
0.008
5
XLOC_013691
hsa-miR-15a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028341
Biotype: transcript isomorph
Gene id: XLOC_013691
Gene Name: XLOC_013691
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
316-338
0.025
1
LINC00461
hsa-miR-15a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000511014
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2800-2817
0.008
8
6mer
454-476
0.007
7
7mer
2802-2827
0.006
5
7mer
1260-1281
0.004
1
RP11-566H8.2
hsa-miR-15a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522611
Biotype: retained_intron
Gene id: ENSG00000254095
Gene Name: RP11-566H8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
472-492
0.013
0
7mer
141-158
0.012
0
CTD-2145A24.5
hsa-miR-15a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584957
Biotype: lincRNA
Gene id: ENSG00000265478
Gene Name: CTD-2145A24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
910-926
0.025
1
LINC01128
hsa-miR-15a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624927
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
645-665
0.025
2
LINC01054
hsa-miR-15a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000446989
Biotype: antisense
Gene id: ENSG00000229723
Gene Name: LINC01054
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
487-506
0.025
1
CTC-429P9.3
hsa-miR-15a-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598112
Biotype: sense_intronic
Gene id: ENSG00000269044
Gene Name: CTC-429P9.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1066-1087
0.025
0
XLOC_013167
hsa-miR-15a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026799
Biotype: transcript isomorph
Gene id: XLOC_013167
Gene Name: XLOC_013167
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2504-2525
0.011
1
8mer+wobble
74-96
0.005
0
7mer
993-1009
0.004
1
6mer
1751-1773
0.002
Not Conserved
6mer
1692-1708
0.002
0
6mer
1786-1805
0.001
1
HM13-AS1
hsa-miR-15a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000412178
Biotype: antisense
Gene id: ENSG00000230613
Gene Name: HM13-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-149
0.025
3
LL22NC03-63E9.3
hsa-miR-15a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000407120
Biotype: antisense
Gene id: ENSG00000220891
Gene Name: LL22NC03-63E9.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2473-2487
0.022
Not Conserved
7mer
1285-1306
0.003
0
KB-1507C5.2
hsa-miR-15a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517996
Biotype: antisense
Gene id: ENSG00000253320
Gene Name: KB-1507C5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
26-44
0.025
0
DGCR5
hsa-miR-15a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_045121.1
Biotype: lincRNA
Gene id: NR_045121.1 (gene)
Gene Name: DGCR5
UCSC graphic: -
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2567-2591
0.020
0
7mer
2697-2709
0.005
0
HCG18
hsa-miR-15a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454269
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1902-1922
0.013
1
7mer
2270-2290
0.010
2
6mer
2140-2156
0.002
1
BLACAT1
hsa-miR-15a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103783.1
Biotype: sense
Gene id: NR_103783.1 (gene)
Gene Name: BLACAT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
36-54
0.011
6
7mer
1844-1870
0.005
0
6mer
1155-1171
0.005
8
6mer
1908-1923
0.003
2
6mer
1311-1334
0.001
2
XLOC_004517
hsa-miR-15a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010065
Biotype: transcript isomorph
Gene id: XLOC_004517
Gene Name: XLOC_004517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2082-2104
0.025
1
XLOC_010664
hsa-miR-15a-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022059
Biotype: transcript isomorph
Gene id: XLOC_010664
Gene Name: XLOC_010664
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
123-145
0.014
6
7mer
132-148
0.011
6
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