LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
CDKN2B-AS1
hsa-miR-15a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421632
Biotype: antisense
Gene id: ENSG00000240498
Gene Name: CDKN2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
428-445
0.025
1
LINC01104
hsa-miR-15a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441036
Biotype: lincRNA
Gene id: ENSG00000232084
Gene Name: LINC01104
UCSC graphic:
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
408-431
0.025
0
CTD-2501M5.1
hsa-miR-15a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519695
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
732-757
0.018
1
8mer+wobble
732-755
0.007
1
GNAS-AS1
hsa-miR-15a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443966
Biotype: antisense
Gene id: ENSG00000235590
Gene Name: GNAS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
967-979
0.018
9
6mer
483-507
0.004
5
6mer
251-268
0.003
1
XLOC_000269
hsa-miR-15a-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000242
Biotype: transcript isomorph
Gene id: XLOC_000269
Gene Name: XLOC_000269
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1849-1869
0.025
1
CTB-131B5.2
hsa-miR-15a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508713
Biotype: sense_intronic
Gene id: ENSG00000250069
Gene Name: CTB-131B5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2894-2914
0.021
1
7mer
1249-1275
0.004
1
MIR181A2HG
hsa-miR-15a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000429139
Biotype: antisense
Gene id: ENSG00000224020
Gene Name: MIR181A2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
159-184
0.025
7
RP11-108P20.1
hsa-miR-15a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592021
Biotype: lincRNA
Gene id: ENSG00000267010
Gene Name: RP11-108P20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2063-2079
0.016
4
7mer
2063-2077
0.009
1
RP11-16E12.2
hsa-miR-15a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559853
Biotype: lincRNA
Gene id: ENSG00000259772
Gene Name: RP11-16E12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
443-452
0.019
1
7mer
580-599
0.006
2
LINC00426
hsa-miR-15a-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000420219
Biotype: lincRNA
Gene id: ENSG00000238121
Gene Name: LINC00426
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
893-919
0.009
1
7mer
974-994
0.006
1
6mer
985-1006
0.006
2
6mer
920-937
0.004
2
RP5-827E24.1
hsa-miR-15a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000616819
Biotype: lincRNA
Gene id: ENSG00000277270
Gene Name: RP5-827E24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
503-528
0.016
2
7mer
263-280
0.009
1
RP11-57H12.5
hsa-miR-15a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624604
Biotype: antisense
Gene id: ENSG00000228852
Gene Name: RP11-57H12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-152
0.025
6
XLOC_009349
hsa-miR-15a-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00020033
Biotype: transcript isomorph
Gene id: XLOC_009349
Gene Name: XLOC_009349
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
722-736
0.012
2
7mer
720-736
0.006
0
7mer
246-256
0.006
Not Conserved
AC003104.1
hsa-miR-15a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000597755
Biotype: sense_intronic
Gene id: ENSG00000236194
Gene Name: AC003104.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1273-1295
0.025
1
LINC01085
hsa-miR-15a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506739
Biotype: lincRNA
Gene id: ENSG00000248698
Gene Name: LINC01085
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1142-1163
0.020
1
6mer
570-591
0.005
3
XLOC_001259
hsa-miR-15a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000762
Biotype: transcript isomorph
Gene id: XLOC_001259
Gene Name: XLOC_001259
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-149
0.012
Not Conserved
8mer
716-733
0.006
0
6mer
1324-1328
0.003
2
7mer
713-729
0.002
0
6mer
1806-1822
0.002
0
XLOC_002775
hsa-miR-15a-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006168
Biotype: transcript isomorph
Gene id: XLOC_002775
Gene Name: XLOC_002775
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
431-455
0.025
2
RP11-96B5.4
hsa-miR-15a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000561565
Biotype: lincRNA
Gene id: ENSG00000261368
Gene Name: RP11-96B5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
906-931
0.014
1
7mer
54-72
0.011
0
LINC00606
hsa-miR-15a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000412578
Biotype: lincRNA
Gene id: ENSG00000226567
Gene Name: LINC00606
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2086-2103
0.013
1
6mer
2308-2330
0.004
3
6mer
2525-2542
0.004
1
6mer
2229-2242
0.002
3
6mer
2475-2494
0.002
1
XLOC_005777
hsa-miR-15a-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011225
Biotype: transcript isomorph
Gene id: XLOC_005777
Gene Name: XLOC_005777
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2433-2458
0.017
2
6mer
1620-1634
0.008
5
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