LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP11-114H23.1
hsa-miR-15a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552466
Biotype: lincRNA
Gene id: ENSG00000258077
Gene Name: RP11-114H23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
142-161
0.015
2
7mer
283-296
0.008
1
6mer
506-522
0.003
0
ZNF252P-AS1
hsa-miR-15a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000527067
Biotype: antisense
Gene id: ENSG00000255559
Gene Name: ZNF252P-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2440-2460
0.019
1
6mer
508-528
0.003
1
6mer
2284-2303
0.003
Not Conserved
XLOC_005355
hsa-miR-15a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011864
Biotype: transcript isomorph
Gene id: XLOC_005355
Gene Name: XLOC_005355
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
597-616
0.015
2
6mer
52-71
0.004
Not Conserved
6mer
235-254
0.003
1
6mer
271-284
0.003
1
LINC00662
hsa-miR-15a-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586248
Biotype: lincRNA
Gene id: ENSG00000261824
Gene Name: LINC00662
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-33
0.017
0
6mer
35-57
0.006
0
6mer
453-476
0.002
Not Conserved
XLOC_002247
hsa-miR-15a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004368
Biotype: transcript isomorph
Gene id: XLOC_002247
Gene Name: XLOC_002247
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-82
0.011
2
7mer
94-113
0.009
3
6mer
96-123
0.006
5
OSBPL10-AS1
hsa-miR-15a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000447181
Biotype: antisense
Gene id: ENSG00000232490
Gene Name: OSBPL10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
433-446
0.025
1
CTD-2020K17.1
hsa-miR-15a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591365
Biotype: antisense
Gene id: ENSG00000267121
Gene Name: CTD-2020K17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2200-2214
0.012
9
6mer
2167-2188
0.005
6
6mer
194-216
0.005
2
6mer
244-265
0.004
1
RP11-78F17.1
hsa-miR-15a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581556
Biotype: lincRNA
Gene id: ENSG00000263551
Gene Name: RP11-78F17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-70
0.010
Not Conserved
7mer
383-406
0.008
Not Conserved
7mer
56-72
0.007
Not Conserved
RP11-669N7.2
hsa-miR-15a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537367
Biotype: antisense
Gene id: ENSG00000249196
Gene Name: RP11-669N7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
206-232
0.014
0
7mer
401-418
0.011
0
RP11-1152H15.1
hsa-miR-15a-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556168
Biotype: lincRNA
Gene id: ENSG00000258807
Gene Name: RP11-1152H15.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
416-430
0.009
Not Conserved
7mer
408-424
0.007
0
7mer
410-430
0.005
Not Conserved
7mer
413-430
0.005
Not Conserved
XLOC_008367
hsa-miR-15a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018098
Biotype: transcript isomorph
Gene id: XLOC_008367
Gene Name: XLOC_008367
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1247-1266
0.018
2
7mer
504-521
0.007
2
RP11-475A13.1
hsa-miR-15a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558262
Biotype: lincRNA
Gene id: ENSG00000259737
Gene Name: RP11-475A13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-290
0.011
0
7mer
262-275
0.008
1
7mer
264-290
0.006
0
RP11-893F2.14
hsa-miR-15a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572855
Biotype: antisense
Gene id: ENSG00000261959
Gene Name: RP11-893F2.14
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
297-315
0.012
3
8mer
1147-1168
0.010
Not Conserved
6mer
1451-1473
0.003
Not Conserved
RP11-16E12.2
hsa-miR-15a-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560812
Biotype: lincRNA
Gene id: ENSG00000259772
Gene Name: RP11-16E12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
496-505
0.019
1
7mer
633-652
0.007
2
NDUFA6-AS1
hsa-miR-15a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000621190
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
278-299
0.014
0
7mer
629-654
0.007
0
RP11-712P20.2
hsa-miR-15a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000593078
Biotype: sense_intronic
Gene id: ENSG00000266965
Gene Name: RP11-712P20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1638-1662
0.025
3
NCBP2-AS2
hsa-miR-15a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602845
Biotype: lincRNA
Gene id: ENSG00000270170
Gene Name: NCBP2-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
700-722
0.019
5
6mer
93-114
0.006
7
CTD-2501M5.1
hsa-miR-15a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524275
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
713-738
0.017
1
8mer+wobble
713-736
0.008
1
FAR2P1
hsa-miR-15a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_026758.1
Biotype: lincRNA
Gene id: NR_026758.1 (gene)
Gene Name: FAR2P1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
272-290
0.018
1
6mer
4496-4513
0.004
1
6mer
3696-3719
0.002
0
6mer
1390-1406
0.002
0
XLOC_009361
hsa-miR-15a-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019566
Biotype: transcript isomorph
Gene id: XLOC_009361
Gene Name: XLOC_009361
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
336-358
0.025
1
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