LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP11-798G7.6
hsa-miR-15a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590995
Biotype: lincRNA
Gene id: ENSG00000267198
Gene Name: RP11-798G7.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
136-152
0.015
Not Conserved
7mer
313-338
0.005
Not Conserved
7mer
313-336
0.003
Not Conserved
6mer
313-333
0.003
Not Conserved
PROSER2-AS1
hsa-miR-15a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000445498
Biotype: antisense
Gene id: ENSG00000225778
Gene Name: PROSER2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
453-480
0.018
0
7mer
1987-2010
0.006
1
6mer
3111-3133
0.003
Not Conserved
CTD-2621I17.6
hsa-miR-15a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587218
Biotype: lincRNA
Gene id: ENSG00000267522
Gene Name: CTD-2621I17.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1452-1477
0.026
1
XLOC_010754
hsa-miR-15a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022389
Biotype: transcript isomorph
Gene id: XLOC_010754
Gene Name: XLOC_010754
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2088-2103
0.010
2
7mer
2250-2266
0.005
0
7mer
2671-2689
0.004
0
6mer
2620-2640
0.004
1
6mer
2794-2810
0.003
0
LINC00843
hsa-miR-15a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000429104
Biotype: lincRNA
Gene id: ENSG00000178440
Gene Name: LINC00843
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
273-289
0.026
0
RP11-143E21.6
hsa-miR-15a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000563922
Biotype: lincRNA
Gene id: ENSG00000259862
Gene Name: RP11-143E21.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
166-177
0.009
1
7mer
99-120
0.008
1
6mer
184-200
0.005
1
6mer
99-118
0.004
1
XLOC_013163
hsa-miR-15a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026836
Biotype: transcript isomorph
Gene id: XLOC_013163
Gene Name: XLOC_013163
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1452-1477
0.026
1
AC000111.6
hsa-miR-15a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000456270
Biotype: antisense
Gene id: ENSG00000083622
Gene Name: AC000111.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
338-354
0.026
1
TARID
hsa-miR-15a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000419627
Biotype: antisense
Gene id: ENSG00000227954
Gene Name: TARID
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
162-179
0.026
1
RP6-91H8.3
hsa-miR-15a-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000602957
Biotype: lincRNA
Gene id: ENSG00000269927
Gene Name: RP6-91H8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1821-1837
0.026
1
LOC648987
hsa-miR-15a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034085.1
Biotype: lincRNA
Gene id: NR_034085.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
793-811
0.012
1
6mer
339-358
0.008
1
7mer
1742-1767
0.006
0
RP11-133K1.7
hsa-miR-15a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568093
Biotype: sense_intronic
Gene id: ENSG00000260648
Gene Name: RP11-133K1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
89-112
0.008
2
8mer
2835-2854
0.008
1
6mer
3813-3828
0.005
3
6mer
609-621
0.002
1
6mer
1083-1104
0.002
1
6mer
1732-1757
0.001
1
bP-21264C1.2
hsa-miR-15a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000623409
Biotype: lincRNA
Gene id: ENSG00000278932
Gene Name: bP-21264C1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
548-568
0.026
Not Conserved
XLOC_013040
hsa-miR-15a-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026991
Biotype: transcript isomorph
Gene id: XLOC_013040
Gene Name: XLOC_013040
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
915-934
0.026
3
CTB-131K11.1
hsa-miR-15a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582842
Biotype: antisense
Gene id: ENSG00000266469
Gene Name: CTB-131K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
164-184
0.026
6
RP11-231E19.1
hsa-miR-15a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000562796
Biotype: lincRNA
Gene id: ENSG00000260059
Gene Name: RP11-231E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2505-2532
0.010
3
6mer
2680-2698
0.005
1
6mer
2622-2640
0.005
4
6mer
2167-2185
0.003
1
6mer
2355-2374
0.002
1
EGFLAM-AS2
hsa-miR-15a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102749.1
Biotype: antisense
Gene id: NR_102749.1 (gene)
Gene Name: EGFLAM-AS2
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
710-730
0.011
1
7mer
713-730
0.010
1
7mer
313-328
0.004
1
AC073283.4
hsa-miR-15a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441997
Biotype: lincRNA
Gene id: ENSG00000234690
Gene Name: AC073283.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-109
0.018
4
6mer
554-579
0.008
4
BANCR
hsa-miR-15a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000624238
Biotype: lincRNA
Gene id: ENSG00000278910
Gene Name: BANCR
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
179-201
0.013
1
7mer
309-334
0.008
1
6mer
311-334
0.005
1
RP1-58B11.1
hsa-miR-15a-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564261
Biotype: lincRNA
Gene id: ENSG00000260972
Gene Name: RP1-58B11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
57-71
0.014
1
6mer
1623-1642
0.004
1
6mer
1298-1313
0.004
1
6mer
835-856
0.003
1
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