LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP11-575F12.3
hsa-miR-15a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000617117
Biotype: lincRNA
Gene id: ENSG00000278266
Gene Name: RP11-575F12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2566-2588
0.015
0
7mer
1445-1458
0.007
1
6mer
2182-2198
0.004
2
CTD-2147F2.2
hsa-miR-15a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558621
Biotype: lincRNA
Gene id: ENSG00000259664
Gene Name: CTD-2147F2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
926-948
0.018
1
7mer
1116-1135
0.008
0
FAM66E
hsa-miR-15a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000533615
Biotype: lincRNA
Gene id: ENSG00000225725
Gene Name: FAM66E
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1193-1214
0.023
1
6mer
1007-1027
0.003
0
XLOC_008295
hsa-miR-15a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
731-758
0.008
0
6mer
4166-4188
0.008
0
6mer
1996-2020
0.005
0
6mer
3100-3121
0.005
0
AC104777.4
hsa-miR-15a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413247
Biotype: lincRNA
Gene id: ENSG00000224048
Gene Name: AC104777.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-174
0.026
1
AC006003.3
hsa-miR-15a-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000448541
Biotype: sense_intronic
Gene id: ENSG00000231515
Gene Name: AC006003.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
287-303
0.010
1
7mer
285-303
0.009
1
6mer
264-286
0.007
4
AC074183.4
hsa-miR-15a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439105
Biotype: lincRNA
Gene id: ENSG00000232019
Gene Name: AC074183.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
558-573
0.015
0
6mer
657-680
0.011
0
XLOC_002996
hsa-miR-15a-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006377
Biotype: transcript isomorph
Gene id: XLOC_002996
Gene Name: XLOC_002996
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-151
0.020
1
7mer
4636-4648
0.002
0
8mer
5216-5237
0.001
Not Conserved
6mer
2360-2375
0.001
Not Conserved
6mer
2559-2581
0.001
Not Conserved
RP11-521O16.2
hsa-miR-15a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000564121
Biotype: lincRNA
Gene id: ENSG00000260163
Gene Name: RP11-521O16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-578
0.016
1
7mer
2001-2017
0.009
2
RP11-1049A21.2
hsa-miR-15a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547942
Biotype: antisense
Gene id: ENSG00000257824
Gene Name: RP11-1049A21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-121
0.026
1
XLOC_005516
hsa-miR-15a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012620
Biotype: transcript isomorph
Gene id: XLOC_005516
Gene Name: XLOC_005516
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
76-101
0.026
1
XLOC_007176
hsa-miR-15a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015126
Biotype: transcript isomorph
Gene id: XLOC_007176
Gene Name: XLOC_007176
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
582-602
0.024
0
6mer
474-491
0.002
2
RP11-244B22.6
hsa-miR-15a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
763-787
0.026
0
CTD-3064H18.4
hsa-miR-15a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000316807
Biotype: antisense
Gene id: ENSG00000180458
Gene Name: CTD-3064H18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2310-2332
0.020
2
6mer
767-793
0.005
1
DKFZP434L187
hsa-miR-15a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562624
Biotype: lincRNA
Gene id: ENSG00000225930
Gene Name: DKFZP434L187
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
707-725
0.010
0
7mer
220-239
0.007
1
6mer
220-237
0.005
1
6mer
2960-2979
0.002
1
6mer
1766-1770
0.002
0
AC012494.1
hsa-miR-15a-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000439259
Biotype: lincRNA
Gene id: ENSG00000229494
Gene Name: AC012494.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
905-931
0.007
4
7mer
908-933
0.007
0
6mer
72-92
0.004
0
7mer
423-444
0.004
1
6mer
423-442
0.002
1
6mer
550-568
0.002
0
TTTY15
hsa-miR-15a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
698-725
0.008
0
6mer
4133-4155
0.008
0
6mer
1963-1987
0.005
0
6mer
3067-3088
0.005
0
RP11-168K11.3
hsa-miR-15a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000437712
Biotype: lincRNA
Gene id: ENSG00000233817
Gene Name: RP11-168K11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2623-2645
0.018
5
6mer
2978-3002
0.005
2
6mer
313-330
0.002
1
XLOC_004211
hsa-miR-15a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008697
Biotype: transcript isomorph
Gene id: XLOC_004211
Gene Name: XLOC_004211
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-139
0.026
1
RP11-243A14.1
hsa-miR-15a-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564305
Biotype: lincRNA
Gene id: ENSG00000261617
Gene Name: RP11-243A14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
898-919
0.014
1
7mer
4118-4143
0.008
0
6mer
1306-1323
0.003
2
6mer
1470-1495
0.001
1
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