LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
SEPT5-GP1BB
hsa-miR-15a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037611.1
Biotype: sense
Gene id: NR_037611.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4230-4243
0.006
6
8mer
4230-4252
0.005
2
7mer
4230-4255
0.004
4
7mer
3763-3787
0.002
1
6mer
4189-4213
0.002
2
6mer
4207-4228
0.002
4
6mer
1542-1565
0.002
8
6mer
1753-1771
0.001
3
6mer
3946-3964
0.001
3
XLOC_002948
hsa-miR-15a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007049
Biotype: transcript isomorph
Gene id: XLOC_002948
Gene Name: XLOC_002948
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
284-304
0.022
6
6mer
689-699
0.004
5
XLOC_000191
hsa-miR-15a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000939
Biotype: transcript isomorph
Gene id: XLOC_000191
Gene Name: XLOC_000191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+mismatch
218-242
0.026
1
SEPT5-GP1BB
hsa-miR-15a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_037612.1
Biotype: sense
Gene id: NR_037612.1 (gene)
Gene Name: SEPT5-GP1BB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2734-2747
0.006
6
8mer
2734-2756
0.005
2
7mer
2734-2759
0.004
4
6mer
257-275
0.004
3
7mer
2267-2291
0.002
1
6mer
2693-2717
0.002
2
6mer
2711-2732
0.002
4
6mer
2450-2468
0.001
3
XLOC_000225
hsa-miR-15a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000966
Biotype: transcript isomorph
Gene id: XLOC_000225
Gene Name: XLOC_000225
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-148
0.018
1
6mer
118-138
0.008
4
LINC00521
hsa-miR-15a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000444118
Biotype: lincRNA
Gene id: ENSG00000175699
Gene Name: LINC00521
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
276-292
0.015
0
6mer
1266-1288
0.007
7
6mer
457-473
0.003
0
6mer
732-758
0.002
Not Conserved
RP11-434D2.7
hsa-miR-15a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587907
Biotype: lincRNA
Gene id: ENSG00000266925
Gene Name: RP11-434D2.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
308-325
0.019
0
6mer
1457-1470
0.007
2
RP11-800A3.4
hsa-miR-15a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000565433
Biotype: sense_overlapping
Gene id: ENSG00000260401
Gene Name: RP11-800A3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
25-45
0.014
Not Conserved
8mer+wobble
384-403
0.007
1
6mer
1576-1602
0.002
3
6mer
768-783
0.002
2
6mer
1679-1697
0.001
1
RP11-79E3.3
hsa-miR-15a-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512581
Biotype: lincRNA
Gene id: ENSG00000250954
Gene Name: RP11-79E3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-309
0.026
1
AC005154.6
hsa-miR-15a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584621
Biotype: antisense
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
890-909
0.009
1
7mer
373-399
0.008
1
6mer
94-117
0.006
0
6mer
1301-1327
0.002
1
7mer
888-909
0.002
1
SND1-IT1
hsa-miR-15a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000623342
Biotype: lincRNA
Gene id: ENSG00000279078
Gene Name: SND1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
663-680
0.015
3
6mer
1982-1994
0.004
2
6mer
1325-1342
0.004
6
6mer
905-926
0.004
2
RP11-474N24.6
hsa-miR-15a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000609787
Biotype: lincRNA
Gene id: ENSG00000272799
Gene Name: RP11-474N24.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10-28
0.014
1
7mer
8-28
0.012
1
RP3-461P17.10
hsa-miR-15a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000595203
Biotype: lincRNA
Gene id: ENSG00000269549
Gene Name: RP3-461P17.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
382-388
0.016
1
7mer
2087-2108
0.004
1
6mer
2866-2882
0.004
0
6mer
2517-2543
0.003
1
RP3-332B22.1
hsa-miR-15a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418834
Biotype: lincRNA
Gene id: ENSG00000236013
Gene Name: RP3-332B22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
710-726
0.026
0
AC108488.4
hsa-miR-15a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438482
Biotype: lincRNA
Gene id: ENSG00000242282
Gene Name: AC108488.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
544-568
0.017
0
6mer
104-130
0.006
0
6mer
72-97
0.003
Not Conserved
CTC-479C5.10
hsa-miR-15a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000572067
Biotype: lincRNA
Gene id: ENSG00000263126
Gene Name: CTC-479C5.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3741-3762
0.007
7
7mer
1078-1092
0.005
Not Conserved
7mer
1677-1693
0.004
1
6mer
660-683
0.002
7
6mer
597-618
0.002
6
7mer
849-868
0.002
1
6mer
1109-1122
0.001
6
6mer
719-741
0.001
0
6mer
2436-2456
0.001
2
7mer
2450-2474
0.000
0
6mer
2450-2471
0.000
0
AC100802.3
hsa-miR-15a-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519197
Biotype: antisense
Gene id: ENSG00000253775
Gene Name: AC100802.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-193
0.012
1
6mer
669-695
0.005
1
7mer
224-249
0.004
0
6mer
836-861
0.003
2
6mer
224-247
0.003
0
TTTY15
hsa-miR-15a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
731-758
0.008
0
6mer
4166-4188
0.008
0
6mer
1996-2020
0.005
0
6mer
3100-3121
0.005
0
XLOC_003555
hsa-miR-15a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008800
Biotype: transcript isomorph
Gene id: XLOC_003555
Gene Name: XLOC_003555
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2544-2562
0.025
1
6mer
1354-1377
0.002
0
XLOC_001562
hsa-miR-15a-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002711
Biotype: transcript isomorph
Gene id: XLOC_001562
Gene Name: XLOC_001562
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1011-1028
0.015
0
7mer
1005-1025
0.008
0
6mer
1031-1049
0.003
1
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