LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
TMEM51-AS1
hsa-miR-15a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000310916
Biotype: antisense
Gene id: ENSG00000175147
Gene Name: TMEM51-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2687-2711
0.010
6
7mer
3536-3559
0.005
2
6mer
698-711
0.004
2
6mer
492-509
0.003
1
6mer
3137-3154
0.002
2
6mer
4933-4949
0.001
1
6mer
1969-1990
0.001
1
6mer
5427-5444
0.001
1
RP11-299J3.8
hsa-miR-15a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000608346
Biotype: antisense
Gene id: ENSG00000272758
Gene Name: RP11-299J3.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
387-401
0.012
1
7mer
407-432
0.010
1
6mer
74-99
0.005
1
RP11-303E16.8
hsa-miR-15a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564536
Biotype: processed_transcript
Gene id: ENSG00000260643
Gene Name: RP11-303E16.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
688-708
0.026
9
NHEG1
hsa-miR-15a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000432330
Biotype: lincRNA
Gene id: ENSG00000225391
Gene Name: NHEG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
886-907
0.020
3
6mer
137-152
0.003
0
6mer
1137-1160
0.003
0
LAMP5-AS1
hsa-miR-15a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000443469
Biotype: antisense
Gene id: ENSG00000225988
Gene Name: LAMP5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1747-1763
0.018
6
6mer
1413-1429
0.004
4
6mer
1680-1701
0.003
1
6mer
1030-1054
0.002
0
CTD-2246P4.1
hsa-miR-15a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585863
Biotype: lincRNA
Gene id: ENSG00000267065
Gene Name: CTD-2246P4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1177-1194
0.026
1
ZNRD1-AS1
hsa-miR-15a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444051
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
3886-3904
0.011
0
6mer
809-834
0.005
1
6mer
8932-8952
0.005
1
6mer
7832-7848
0.003
1
6mer
8607-8625
0.002
0
HCG18
hsa-miR-15a-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449544
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3773-3793
0.013
1
7mer
4141-4161
0.010
2
6mer
4011-4027
0.002
1
6mer
1610-1621
0.001
1
XLOC_001343
hsa-miR-15a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002818
Biotype: transcript isomorph
Gene id: XLOC_001343
Gene Name: XLOC_001343
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2323-2348
0.012
0
7mer
1091-1104
0.007
1
7mer
2845-2867
0.005
Not Conserved
6mer
1773-1788
0.002
0
RP11-124N3.2
hsa-miR-15a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000515123
Biotype: lincRNA
Gene id: ENSG00000251487
Gene Name: RP11-124N3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-40
0.026
0
RP11-473C18.3
hsa-miR-15a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565685
Biotype: antisense
Gene id: ENSG00000261687
Gene Name: RP11-473C18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
89-101
0.026
0
RP11-158H5.7
hsa-miR-15a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586922
Biotype: lincRNA
Gene id: ENSG00000268573
Gene Name: RP11-158H5.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4332-4347
0.017
3
7mer
1770-1784
0.004
0
6mer
4079-4095
0.003
1
8mer+wobble
3708-3725
0.002
1
7mer
3649-3668
0.001
Not Conserved
XLOC_010219
hsa-miR-15a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020953
Biotype: transcript isomorph
Gene id: XLOC_010219
Gene Name: XLOC_010219
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
894-912
0.019
3
7mer
1218-1244
0.007
0
ABCA9-AS1
hsa-miR-15a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000458677
Biotype: antisense
Gene id: ENSG00000231749
Gene Name: ABCA9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
74-93
0.026
7
NHEG1
hsa-miR-15a-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027994.1
Biotype: lincRNA
Gene id: NR_027994.1 (gene)
Gene Name: NHEG1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
892-913
0.020
3
6mer
143-158
0.003
0
6mer
1143-1166
0.003
0
CTD-2524L6.3
hsa-miR-15a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000563041
Biotype: antisense
Gene id: ENSG00000260037
Gene Name: CTD-2524L6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
448-468
0.015
3
6mer
511-522
0.011
5
XLOC_009944
hsa-miR-15a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020645
Biotype: transcript isomorph
Gene id: XLOC_009944
Gene Name: XLOC_009944
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3495-3516
0.010
6
7mer
1088-1110
0.008
0
6mer
34-53
0.004
1
6mer
704-720
0.003
2
6mer
2386-2401
0.002
1
RP11-514P8.8
hsa-miR-15a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000481893
Biotype: processed_transcript
Gene id: ENSG00000272949
Gene Name: RP11-514P8.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3362-3375
0.012
0
6mer
578-600
0.006
9
7mer
3380-3394
0.004
0
6mer
344-366
0.003
5
6mer
2250-2272
0.002
3
RP11-93B14.9
hsa-miR-15a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000617703
Biotype: antisense
Gene id: ENSG00000277496
Gene Name: RP11-93B14.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1702-1727
0.017
2
6mer
1571-1593
0.006
1
6mer
1645-1665
0.004
1
ACVR2B-AS1
hsa-miR-15a-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441531
Biotype: antisense
Gene id: ENSG00000229589
Gene Name: ACVR2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
100-124
0.006
0
7mer
2469-2490
0.006
0
7mer
2460-2479
0.005
0
7mer
2466-2490
0.005
0
7mer
2463-2477
0.004
0
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