LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
LINC00924
hsa-miR-15a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000556053
Biotype: lincRNA
Gene id: ENSG00000259134
Gene Name: LINC00924
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2662-2677
0.027
0
AC008079.10
hsa-miR-15a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
19174-19199
0.007
0
8mer+wobble
20164-20184
0.006
3
6mer
13442-13467
0.003
9
6mer
7841-7851
0.002
1
6mer
679-700
0.002
Not Conserved
6mer
3783-3808
0.002
1
6mer
11021-11043
0.001
0
6mer
1674-1688
0.001
0
6mer
3565-3587
0.001
1
6mer
10325-10347
0.001
0
6mer
5644-5664
0.001
Not Conserved
6mer
17662-17675
0.001
0
AC062029.1
hsa-miR-15a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000453008
Biotype: antisense
Gene id: ENSG00000234028
Gene Name: AC062029.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1301-1318
0.015
0
7mer
1295-1315
0.008
0
6mer
1321-1339
0.004
1
CTD-2501M5.1
hsa-miR-15a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519005
Biotype: lincRNA
Gene id: ENSG00000253507
Gene Name: CTD-2501M5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
686-711
0.019
1
8mer+wobble
686-709
0.008
1
RP11-120D5.1
hsa-miR-15a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000433747
Biotype: lincRNA
Gene id: ENSG00000234129
Gene Name: RP11-120D5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
857-873
0.019
1
7mer
601-626
0.008
3
CDKN2B-AS1
hsa-miR-15a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000581051
Biotype: antisense
Gene id: ENSG00000240498
Gene Name: CDKN2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
688-705
0.020
1
6mer
914-937
0.004
1
6mer
729-747
0.003
1
RP11-807H22.7
hsa-miR-15a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000378140
Biotype: antisense
Gene id: ENSG00000204971
Gene Name: RP11-807H22.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
226-243
0.027
1
RP11-114H20.1
hsa-miR-15a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375644
Biotype: lincRNA
Gene id: ENSG00000182776
Gene Name: RP11-114H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
657-670
0.023
1
6mer
1748-1765
0.004
1
RP11-108M12.3
hsa-miR-15a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554160
Biotype: lincRNA
Gene id: ENSG00000258592
Gene Name: RP11-108M12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
321-347
0.019
5
6mer
587-603
0.005
4
6mer
555-571
0.003
2
HCG18
hsa-miR-15a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602516
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-156
0.010
2
7mer
2512-2530
0.010
1
6mer
136-156
0.005
1
6mer
1369-1391
0.003
0
RP11-158D2.2
hsa-miR-15a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423515
Biotype: lincRNA
Gene id: ENSG00000227463
Gene Name: RP11-158D2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1712-1724
0.006
0
6mer
1480-1503
0.005
4
7mer
411-430
0.005
1
7mer
406-424
0.004
1
7mer
411-427
0.003
1
7mer
1494-1516
0.003
1
6mer
1494-1514
0.002
0
SSTR5-AS1
hsa-miR-15a-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569832
Biotype: lincRNA
Gene id: ENSG00000261713
Gene Name: SSTR5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-104
0.019
1
8mer
2664-2685
0.005
0
6mer
2798-2821
0.003
0
NHEG1
hsa-miR-15a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000418699
Biotype: lincRNA
Gene id: ENSG00000225391
Gene Name: NHEG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
886-907
0.020
3
6mer
137-152
0.004
0
6mer
1129-1152
0.003
0
AC079779.5
hsa-miR-15a-5p
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000585703
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
431-456
0.027
1
STARD13-AS
hsa-miR-15a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000588966
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
414-440
0.017
0
8mer
578-595
0.009
1
RP11-16E12.2
hsa-miR-15a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559094
Biotype: lincRNA
Gene id: ENSG00000259772
Gene Name: RP11-16E12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-476
0.017
1
7mer
604-622
0.009
2
RP11-153N17.1
hsa-miR-15a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441295
Biotype: lincRNA
Gene id: ENSG00000233960
Gene Name: RP11-153N17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
352-378
0.013
1
7mer
78-100
0.009
1
6mer
81-100
0.004
1
LINC00843
hsa-miR-15a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444438
Biotype: lincRNA
Gene id: ENSG00000178440
Gene Name: LINC00843
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-217
0.027
0
C3orf67-AS1
hsa-miR-15a-5p
0.726
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492031
Biotype: antisense
Gene id: ENSG00000242428
Gene Name: C3orf67-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-58
0.027
5
RP11-57H12.5
hsa-miR-15a-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000444665
Biotype: antisense
Gene id: ENSG00000228852
Gene Name: RP11-57H12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-94
0.027
6
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