LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
AC008834.1
hsa-miR-15a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505908
Biotype: lincRNA
Gene id: ENSG00000248901
Gene Name: AC008834.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-92
0.027
1
AC104777.4
hsa-miR-15a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000423428
Biotype: lincRNA
Gene id: ENSG00000224048
Gene Name: AC104777.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
63-79
0.027
1
AC020743.4
hsa-miR-15a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440351
Biotype: lincRNA
Gene id: ENSG00000235620
Gene Name: AC020743.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
240-249
0.018
5
7mer
258-276
0.005
0
6mer
129-153
0.004
0
CTB-47B11.3
hsa-miR-15a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508443
Biotype: antisense
Gene id: ENSG00000248544
Gene Name: CTB-47B11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
789-809
0.027
2
LINC00475
hsa-miR-15a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000421234
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
76-87
0.015
0
6mer
145-163
0.012
0
STARD13-AS
hsa-miR-15a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000590997
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
294-320
0.019
0
8mer
458-475
0.008
1
RP11-138C9.1
hsa-miR-15a-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578482
Biotype: antisense
Gene id: ENSG00000264558
Gene Name: RP11-138C9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
147-164
0.012
6
6mer
169-184
0.009
8
6mer
150-175
0.006
8
RP1-225E12.2
hsa-miR-15a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000588529
Biotype: antisense
Gene id: ENSG00000231329
Gene Name: RP1-225E12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
402-419
0.024
11
6mer
727-740
0.003
1
GJA9-MYCBP
hsa-miR-15a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037635.1
Biotype: sense
Gene id: NR_037635.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2328-2346
0.013
5
8mer+wobble
1522-1541
0.005
1
6mer
2300-2323
0.004
6
6mer
87-108
0.004
0
RP13-582O9.5
hsa-miR-15a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518073
Biotype: antisense
Gene id: ENSG00000253716
Gene Name: RP13-582O9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
289-308
0.023
1
7mer
325-348
0.005
0
XLOC_012139
hsa-miR-15a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025161
Biotype: transcript isomorph
Gene id: XLOC_012139
Gene Name: XLOC_012139
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-129
0.027
1
RP11-138I1.4
hsa-miR-15a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583934
Biotype: antisense
Gene id: ENSG00000265401
Gene Name: RP11-138I1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
128-146
0.017
14
6mer
356-370
0.010
12
RP11-417E7.2
hsa-miR-15a-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564830
Biotype: lincRNA
Gene id: ENSG00000261039
Gene Name: RP11-417E7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
472-499
0.022
Not Conserved
6mer
274-295
0.005
0
RP5-905H7.9
hsa-miR-15a-5p
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000426550
Biotype: lincRNA
Gene id: ENSG00000226587
Gene Name: RP5-905H7.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
148-163
0.027
0
PDZRN3-AS1
hsa-miR-15a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000619517
Biotype: antisense
Gene id: ENSG00000239677
Gene Name: PDZRN3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
514-529
0.027
3
LINC00969
hsa-miR-15a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000445430
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-355
0.014
4
8mer
578-597
0.008
2
6mer
144-160
0.005
2
XLOC_000943
hsa-miR-15a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000590
Biotype: transcript isomorph
Gene id: XLOC_000943
Gene Name: XLOC_000943
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
987-1006
0.019
Not Conserved
7mer
822-847
0.008
0
RP4-769N13.6
hsa-miR-15a-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000466616
Biotype: processed_transcript
Gene id: ENSG00000271147
Gene Name: RP4-769N13.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
834-858
0.017
3
7mer
240-261
0.010
1
AC012123.1
hsa-miR-15a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000426194
Biotype: antisense
Gene id: ENSG00000228835
Gene Name: AC012123.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
555-580
0.011
14
7mer
793-811
0.010
2
6mer
584-594
0.007
14
RP11-412P11.1
hsa-miR-15a-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000511453
Biotype: lincRNA
Gene id: ENSG00000248837
Gene Name: RP11-412P11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-303
0.027
1
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