LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP11-344E13.3
hsa-miR-15a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000443508
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
90-109
0.028
1
RP11-344E13.3
hsa-miR-15a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584433
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
244-265
0.014
0
6mer
206-222
0.013
0
LINC01204
hsa-miR-15a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000435394
Biotype: lincRNA
Gene id: ENSG00000229563
Gene Name: LINC01204
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
38-57
0.025
4
6mer
788-809
0.003
1
C14orf182
hsa-miR-15a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000529902
Biotype: lincRNA
Gene id: ENSG00000214900
Gene Name: C14orf182
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3293-3310
0.007
2
7mer
437-456
0.004
0
6mer
445-458
0.003
1
7mer
442-456
0.003
1
7mer
439-456
0.003
0
6mer
910-935
0.002
1
7mer
3274-3294
0.002
1
6mer
1174-1192
0.002
1
6mer
3135-3160
0.002
3
CFAP44-AS1
hsa-miR-15a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473329
Biotype: antisense
Gene id: ENSG00000243849
Gene Name: CFAP44-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
362-379
0.027
5
XLOC_005575
hsa-miR-15a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012041
Biotype: transcript isomorph
Gene id: XLOC_005575
Gene Name: XLOC_005575
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1719-1740
0.011
1
7mer
1739-1755
0.007
1
6mer
1506-1531
0.006
4
6mer
1101-1123
0.002
0
6mer
1084-1096
0.001
1
LINC00423
hsa-miR-15a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000421002
Biotype: lincRNA
Gene id: ENSG00000226968
Gene Name: LINC00423
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
598-622
0.016
1
7mer
17-39
0.007
0
6mer
440-453
0.004
1
RP11-373E16.3
hsa-miR-15a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000497988
Biotype: sense_intronic
Gene id: ENSG00000244738
Gene Name: RP11-373E16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2554-2579
0.026
1
6mer
1449-1469
0.002
1
CTD-2303H24.2
hsa-miR-15a-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000608216
Biotype: processed_transcript
Gene id: ENSG00000273018
Gene Name: CTD-2303H24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
574-596
0.027
0
BANCR
hsa-miR-15a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000625062
Biotype: lincRNA
Gene id: ENSG00000278910
Gene Name: BANCR
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
182-204
0.013
1
7mer
312-330
0.010
1
6mer
314-341
0.004
1
XLOC_012733
hsa-miR-15a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026382
Biotype: transcript isomorph
Gene id: XLOC_012733
Gene Name: XLOC_012733
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2515-2521
0.027
1
XLOC_008829
hsa-miR-15a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018522
Biotype: transcript isomorph
Gene id: XLOC_008829
Gene Name: XLOC_008829
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
248-265
0.027
0
RP11-314C16.1
hsa-miR-15a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_038979.1
Biotype: lincRNA
Gene id: NR_038979.1 (gene)
Gene Name: RP11-314C16.1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
523-542
0.025
1
6mer
1447-1473
0.002
0
LINC00601
hsa-miR-15a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456514
Biotype: lincRNA
Gene id: ENSG00000235180
Gene Name: LINC00601
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
894-912
0.027
0
AC108448.3
hsa-miR-15a-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000455154
Biotype: antisense
Gene id: ENSG00000234791
Gene Name: AC108448.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
241-266
0.027
0
PDXDC2P
hsa-miR-15a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000530079
Biotype: processed_transcript
Gene id: ENSG00000196696
Gene Name: PDXDC2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2030-2048
0.018
6
8mer
2027-2048
0.009
5
LINC00461
hsa-miR-15a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000500197
Biotype: lincRNA
Gene id: ENSG00000245526
Gene Name: LINC00461
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2801-2818
0.010
8
7mer
2803-2828
0.007
5
6mer
455-477
0.007
7
7mer
1261-1282
0.004
1
C3orf67-AS1
hsa-miR-15a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493123
Biotype: antisense
Gene id: ENSG00000242428
Gene Name: C3orf67-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-62
0.023
5
6mer
375-398
0.005
0
RP11-122M14.1
hsa-miR-15a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000443174
Biotype: antisense
Gene id: ENSG00000231057
Gene Name: RP11-122M14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
405-424
0.024
0
6mer
74-93
0.003
0
RP11-512C24.3
hsa-miR-15a-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000325811
Biotype: lincRNA
Gene id: ENSG00000177596
Gene Name: RP11-512C24.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
846-871
0.017
1
6mer
2024-2041
0.004
2
6mer
1882-1900
0.004
1
6mer
1624-1646
0.002
1
6mer
818-843
0.001
1
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