LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP11-480A16.1
hsa-miR-15a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000570130
Biotype: lincRNA
Gene id: ENSG00000260261
Gene Name: RP11-480A16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3460-3485
0.011
Not Conserved
7mer
1437-1463
0.006
1
7mer
3266-3287
0.005
Not Conserved
7mer
2058-2079
0.004
0
6mer
685-708
0.002
0
TNRC6C-AS1
hsa-miR-15a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589217
Biotype: antisense
Gene id: ENSG00000204282
Gene Name: TNRC6C-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3121-3146
0.007
0
8mer
2550-2563
0.006
1
8mer
2917-2931
0.005
0
6mer
2699-2720
0.004
2
6mer
584-597
0.002
2
6mer
1919-1941
0.002
1
6mer
577-597
0.001
0
TNRC6C-AS1
hsa-miR-15a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_040071.1
Biotype: sense
Gene id: NR_040071.1 (gene)
Gene Name: TNRC6C-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3118-3143
0.007
0
8mer
2547-2560
0.006
1
8mer
2914-2928
0.005
0
6mer
2696-2717
0.004
2
6mer
581-594
0.002
2
6mer
1916-1938
0.002
1
6mer
574-594
0.001
0
XLOC_010856
hsa-miR-15a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022532
Biotype: transcript isomorph
Gene id: XLOC_010856
Gene Name: XLOC_010856
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3016-3027
0.012
0
7mer
2242-2257
0.005
2
6mer
3227-3252
0.004
1
6mer
466-478
0.003
1
7mer
1173-1186
0.002
1
6mer
1162-1183
0.002
1
AC003092.1
hsa-miR-15a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415536
Biotype: lincRNA
Gene id: ENSG00000236453
Gene Name: AC003092.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
548-567
0.018
2
6mer
580-601
0.006
0
6mer
548-559
0.004
0
RP5-1101C3.1
hsa-miR-15a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000593910
Biotype: antisense
Gene id: ENSG00000240499
Gene Name: RP5-1101C3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
445-466
0.028
1
XLOC_014207
hsa-miR-15a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029793
Biotype: transcript isomorph
Gene id: XLOC_014207
Gene Name: XLOC_014207
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
550-575
0.024
0
6mer
550-565
0.003
0
LINC01205
hsa-miR-15a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000497996
Biotype: lincRNA
Gene id: ENSG00000228980
Gene Name: LINC01205
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1025-1041
0.013
0
7mer
757-784
0.009
3
6mer
34-54
0.006
1
LINC00969
hsa-miR-15a-5p
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000457233
Biotype: lincRNA
Gene id: ENSG00000242086
Gene Name: LINC00969
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
349-370
0.014
4
8mer
593-612
0.008
2
6mer
159-175
0.005
2
XLOC_005739
hsa-miR-15a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012742
Biotype: transcript isomorph
Gene id: XLOC_005739
Gene Name: XLOC_005739
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
308-328
0.023
2
6mer
219-241
0.005
1
C21orf90
hsa-miR-15a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000330490
Biotype: antisense
Gene id: ENSG00000182912
Gene Name: C21orf90
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
375-396
0.028
1
CTC-246B18.8
hsa-miR-15a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601911
Biotype: sense_overlapping
Gene id: ENSG00000268262
Gene Name: CTC-246B18.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
617-642
0.016
8
7mer
619-642
0.012
6
XLOC_000332
hsa-miR-15a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001088
Biotype: transcript isomorph
Gene id: XLOC_000332
Gene Name: XLOC_000332
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
257-277
0.009
1
7mer
257-279
0.009
3
7mer
278-295
0.009
1
LOC101927881
hsa-miR-15a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110278.1
Biotype: lincRNA
Gene id: NR_110278.1 (gene)
Gene Name: LOC101927881
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1022-1034
0.010
1
6mer
1007-1018
0.006
1
6mer
870-883
0.005
1
6mer
227-252
0.004
0
6mer
173-190
0.003
0
TARID
hsa-miR-15a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606544
Biotype: antisense
Gene id: ENSG00000227954
Gene Name: TARID
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
265-282
0.028
1
LINC01376
hsa-miR-15a-5p
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000432142
Biotype: lincRNA
Gene id: ENSG00000236204
Gene Name: LINC01376
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-73
0.028
8
PCAT19
hsa-miR-15a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597702
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
846-862
0.019
1
6mer
173-190
0.009
0
RP11-2C24.4
hsa-miR-15a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000483578
Biotype: processed_transcript
Gene id: ENSG00000260899
Gene Name: RP11-2C24.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
83-94
0.008
8
7mer
103-123
0.007
6
6mer
149-170
0.005
5
6mer
94-120
0.005
5
6mer
122-140
0.002
1
RP11-154D6.1
hsa-miR-15a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000589255
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
623-647
0.025
1
6mer
419-445
0.003
0
AC105402.4
hsa-miR-15a-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601658
Biotype: antisense
Gene id: ENSG00000231079
Gene Name: AC105402.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-115
0.028
5
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