LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
LINC01140
hsa-miR-15a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000461990
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-306
0.019
0
6mer
21-43
0.003
1
6mer
127-139
0.003
1
6mer
855-876
0.003
1
HCG18
hsa-miR-15a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444126
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3773-3793
0.010
1
7mer
4497-4517
0.008
2
7mer
4293-4304
0.007
2
6mer
4011-4027
0.002
1
6mer
1610-1621
0.001
1
XLOC_011063
hsa-miR-15a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022778
Biotype: transcript isomorph
Gene id: XLOC_011063
Gene Name: XLOC_011063
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
634-659
0.022
1
6mer
582-601
0.006
1
RP11-16E12.2
hsa-miR-15a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558109
Biotype: lincRNA
Gene id: ENSG00000259772
Gene Name: RP11-16E12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
398-407
0.019
1
7mer
535-554
0.009
2
XLOC_001707
hsa-miR-15a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004918
Biotype: transcript isomorph
Gene id: XLOC_001707
Gene Name: XLOC_001707
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
298-314
0.028
1
RP11-796E2.4
hsa-miR-15a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000499685
Biotype: antisense
Gene id: ENSG00000245904
Gene Name: RP11-796E2.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3634-3658
0.013
4
8mer+wobble
916-937
0.007
1
7mer
1334-1354
0.006
0
6mer
4147-4173
0.001
1
GPR1-AS
hsa-miR-15a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000623040
Biotype: antisense
Gene id: ENSG00000279220
Gene Name: GPR1-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3016-3043
0.026
0
6mer
2854-2868
0.002
1
XLOC_011417
hsa-miR-15a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023613
Biotype: transcript isomorph
Gene id: XLOC_011417
Gene Name: XLOC_011417
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2815-2833
0.024
0
6mer
1769-1773
0.002
3
6mer
1378-1397
0.002
0
CTC-508F8.1
hsa-miR-15a-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575612
Biotype: antisense
Gene id: ENSG00000263331
Gene Name: CTC-508F8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
12-34
0.018
7
7mer
81-103
0.006
2
7mer
81-105
0.004
1
HCG18
hsa-miR-15a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454129
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3773-3793
0.012
1
7mer
4283-4303
0.008
2
7mer
4079-4090
0.005
2
6mer
4011-4027
0.002
1
6mer
1610-1621
0.001
1
RP11-791M20.1
hsa-miR-15a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000568788
Biotype: lincRNA
Gene id: ENSG00000261030
Gene Name: RP11-791M20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
876-899
0.028
2
C21orf90
hsa-miR-15a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026548.1
Biotype: antisense
Gene id: NR_026548.1 (gene)
Gene Name: C21orf90
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
376-397
0.028
1
RP11-673P17.2
hsa-miR-15a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565783
Biotype: antisense
Gene id: ENSG00000261482
Gene Name: RP11-673P17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
363-380
0.009
7
6mer
405-420
0.005
2
6mer
290-306
0.004
1
7mer
130-148
0.004
Not Conserved
6mer
241-263
0.003
4
6mer
194-213
0.003
2
SH3BP5-AS1
hsa-miR-15a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420195
Biotype: antisense
Gene id: ENSG00000224660
Gene Name: SH3BP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1958-1975
0.005
10
8mer
3654-3678
0.003
2
7mer
3356-3372
0.003
0
7mer
4281-4300
0.003
0
7mer
2640-2663
0.003
0
6mer
4990-5011
0.003
2
7mer
2974-2999
0.002
0
8mer
1996-2018
0.002
2
6mer
4458-4482
0.002
0
6mer
3856-3881
0.001
0
6mer
3978-3992
0.001
0
6mer
2040-2052
0.000
1
XLOC_014102
hsa-miR-15a-5p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029156
Biotype: transcript isomorph
Gene id: XLOC_014102
Gene Name: XLOC_014102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3209-3227
0.006
1
7mer
1422-1441
0.004
1
7mer
2281-2294
0.004
Not Conserved
6mer
704-726
0.003
1
6mer
350-366
0.003
1
6mer
1162-1178
0.002
1
6mer
3276-3296
0.002
0
7mer
2465-2482
0.002
0
6mer
2520-2545
0.001
1
6mer
1337-1351
0.001
0
CTD-2339L15.3
hsa-miR-15a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559841
Biotype: sense_intronic
Gene id: ENSG00000259254
Gene Name: CTD-2339L15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
166-189
0.028
1
RP11-408E5.5
hsa-miR-15a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000428785
Biotype: lincRNA
Gene id: ENSG00000232243
Gene Name: RP11-408E5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
228-239
0.028
3
FAM66C
hsa-miR-15a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000438689
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
152-179
0.028
0
XLOC_003649
hsa-miR-15a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008197
Biotype: transcript isomorph
Gene id: XLOC_003649
Gene Name: XLOC_003649
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
612-636
0.028
1
RP5-997D16.2
hsa-miR-15a-5p
0.740
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000429293
Biotype: antisense
Gene id: ENSG00000230163
Gene Name: RP5-997D16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
409-428
0.017
1
6mer
322-333
0.007
4
6mer
559-578
0.004
1
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