LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP1-168P16.2
hsa-miR-15a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562211
Biotype: sense_intronic
Gene id: ENSG00000261574
Gene Name: RP1-168P16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
149-168
0.028
2
XLOC_009514
hsa-miR-15a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019717
Biotype: transcript isomorph
Gene id: XLOC_009514
Gene Name: XLOC_009514
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13-29
0.028
6
RP11-380D23.1
hsa-miR-15a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503998
Biotype: antisense
Gene id: ENSG00000250511
Gene Name: RP11-380D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
176-193
0.024
3
6mer
127-144
0.004
0
TTC28-AS1
hsa-miR-15a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000428584
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
823-843
0.011
6
6mer
109-134
0.006
7
9mer
2215-2234
0.003
1
7mer
4519-4542
0.003
0
6mer
5441-5460
0.003
1
6mer
495-521
0.002
1
6mer
2157-2178
0.001
Not Conserved
XLOC_006934
hsa-miR-15a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014865
Biotype: transcript isomorph
Gene id: XLOC_006934
Gene Name: XLOC_006934
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4166-4185
0.018
0
8mer
1062-1080
0.004
0
6mer
442-468
0.003
1
6mer
632-654
0.002
1
7mer
1062-1083
0.001
1
RP11-94H18.1
hsa-miR-15a-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000507496
Biotype: lincRNA
Gene id: ENSG00000248964
Gene Name: RP11-94H18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1377-1398
0.028
0
XLOC_004536
hsa-miR-15a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010079
Biotype: transcript isomorph
Gene id: XLOC_004536
Gene Name: XLOC_004536
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
345-364
0.019
4
6mer
2078-2103
0.006
3
6mer
950-975
0.003
5
RP11-4B16.4
hsa-miR-15a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000611482
Biotype: antisense
Gene id: ENSG00000278330
Gene Name: RP11-4B16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2827-2853
0.023
1
6mer
2357-2378
0.003
1
6mer
814-836
0.001
0
6mer
2445-2462
0.001
0
XLOC_011492
hsa-miR-15a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023690
Biotype: transcript isomorph
Gene id: XLOC_011492
Gene Name: XLOC_011492
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
799-813
0.009
0
7mer
794-813
0.007
0
7mer
796-813
0.006
0
6mer
476-502
0.005
2
AF064858.6
hsa-miR-15a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000380931
Biotype: lincRNA
Gene id: ENSG00000205622
Gene Name: AF064858.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3407-3418
0.008
1
8mer
1992-2018
0.008
1
8mer
3590-3607
0.007
0
6mer
892-909
0.003
2
6mer
3458-3473
0.003
1
AC021218.2
hsa-miR-15a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000377722
Biotype: lincRNA
Gene id: ENSG00000204876
Gene Name: AC021218.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
181-206
0.011
1
7mer
1435-1451
0.008
1
6mer
374-400
0.004
1
6mer
724-743
0.003
1
6mer
1950-1969
0.003
1
RP11-57H14.4
hsa-miR-15a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000564352
Biotype: sense_overlapping
Gene id: ENSG00000260917
Gene Name: RP11-57H14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3934-3958
0.018
1
6mer
3645-3669
0.005
5
6mer
1702-1727
0.002
2
6mer
954-974
0.002
1
6mer
1339-1360
0.001
1
6mer
2016-2034
0.001
Not Conserved
MEG9
hsa-miR-15a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000429368
Biotype: lincRNA
Gene id: ENSG00000223403
Gene Name: MEG9
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2018-2030
0.015
1
6mer
278-302
0.005
1
6mer
83-105
0.004
1
6mer
2059-2069
0.002
1
6mer
1368-1385
0.002
1
7mer
1412-1432
0.001
1
XLOC_013703
hsa-miR-15a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028028
Biotype: transcript isomorph
Gene id: XLOC_013703
Gene Name: XLOC_013703
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
73-96
0.016
0
6mer
1627-1643
0.012
0
C5orf64
hsa-miR-15a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000313303
Biotype: processed_transcript
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1854-1878
0.008
2
7mer
2442-2462
0.006
2
7mer
2442-2459
0.005
3
6mer
2142-2155
0.005
5
7mer
2442-2456
0.005
1
SLC16A1-AS1
hsa-miR-15a-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000416193
Biotype: antisense
Gene id: ENSG00000226419
Gene Name: SLC16A1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-563
0.028
1
STARD13-AS
hsa-miR-15a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000589800
Biotype: antisense
Gene id: ENSG00000236581
Gene Name: STARD13-AS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
414-440
0.019
0
8mer
578-595
0.010
1
XLOC_008538
hsa-miR-15a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018256
Biotype: transcript isomorph
Gene id: XLOC_008538
Gene Name: XLOC_008538
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-102
0.025
0
6mer
1030-1042
0.003
0
RP11-154D6.1
hsa-miR-15a-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000587015
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
499-523
0.025
1
6mer
295-321
0.003
0
AC073283.4
hsa-miR-15a-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419035
Biotype: lincRNA
Gene id: ENSG00000234690
Gene Name: AC073283.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-26
0.021
1
7mer
1263-1279
0.007
1
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