LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP11-473L15.3
hsa-miR-15a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510758
Biotype: lincRNA
Gene id: ENSG00000249203
Gene Name: RP11-473L15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
422-443
0.020
4
7mer
420-443
0.008
1
RP11-379F4.7
hsa-miR-15a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607624
Biotype: lincRNA
Gene id: ENSG00000272087
Gene Name: RP11-379F4.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
602-623
0.029
2
LINC01128
hsa-miR-15a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000610067
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-467
0.026
2
6mer
71-94
0.003
0
RP11-178L8.5
hsa-miR-15a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569872
Biotype: sense_intronic
Gene id: ENSG00000261697
Gene Name: RP11-178L8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
37-58
0.017
2
7mer
1681-1694
0.006
Not Conserved
6mer
282-304
0.003
0
6mer
1510-1529
0.003
0
XLOC_003461
hsa-miR-15a-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007998
Biotype: transcript isomorph
Gene id: XLOC_003461
Gene Name: XLOC_003461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
25-50
0.020
1
7mer
25-47
0.009
1
RP11-445L6.3
hsa-miR-15a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444701
Biotype: lincRNA
Gene id: ENSG00000234692
Gene Name: RP11-445L6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
290-306
0.029
1
RP11-63B13.1
hsa-miR-15a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000567769
Biotype: lincRNA
Gene id: ENSG00000261501
Gene Name: RP11-63B13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
763-783
0.029
1
XLOC_007640
hsa-miR-15a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016745
Biotype: transcript isomorph
Gene id: XLOC_007640
Gene Name: XLOC_007640
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
412-424
0.013
0
7mer
425-447
0.008
1
6mer
56-83
0.008
2
LINC00639
hsa-miR-15a-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554732
Biotype: lincRNA
Gene id: ENSG00000259070
Gene Name: LINC00639
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4250-4272
0.012
1
7mer
3842-3867
0.006
0
6mer
430-450
0.003
0
6mer
677-694
0.003
0
7mer
1700-1718
0.002
1
6mer
1428-1446
0.001
0
7mer
1660-1679
0.000
1
6mer
1663-1682
0.000
1
DSCR10
hsa-miR-15a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000432141
Biotype: sense_intronic
Gene id: ENSG00000233316
Gene Name: DSCR10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
674-700
0.029
1
RP11-757G1.6
hsa-miR-15a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
356-371
0.029
0
RP11-97O12.2
hsa-miR-15a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000506090
Biotype: lincRNA
Gene id: ENSG00000249487
Gene Name: RP11-97O12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
12-32
0.029
0
C5orf64
hsa-miR-15a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505642
Biotype: lincRNA
Gene id: ENSG00000178722
Gene Name: C5orf64
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1929-1953
0.008
2
7mer
2517-2537
0.006
2
7mer
2517-2534
0.005
3
6mer
2217-2230
0.005
5
7mer
2517-2531
0.005
1
LINC00315
hsa-miR-15a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000441947
Biotype: lincRNA
Gene id: ENSG00000184274
Gene Name: LINC00315
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2246-2267
0.018
0
6mer
339-359
0.005
1
6mer
165-191
0.002
0
6mer
1487-1512
0.002
1
6mer
1188-1214
0.002
1
ZFHX4-AS1
hsa-miR-15a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522357
Biotype: antisense
Gene id: ENSG00000253661
Gene Name: ZFHX4-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
522-535
0.016
3
7mer
475-498
0.013
Not Conserved
RP11-120M18.2
hsa-miR-15a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590353
Biotype: processed_transcript
Gene id: ENSG00000267009
Gene Name: RP11-120M18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
568-591
0.021
9
6mer
252-270
0.005
3
6mer
26-41
0.003
0
LOC643441
hsa-miR-15a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_038846.1
Biotype: lincRNA
Gene id: NR_038846.1 (gene)
Gene Name: LOC643441
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-116
0.018
1
6mer
294-311
0.005
1
6mer
1951-1972
0.003
1
6mer
663-676
0.002
0
RP1-34H18.1
hsa-miR-15a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550042
Biotype: lincRNA
Gene id: ENSG00000231121
Gene Name: RP1-34H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
847-867
0.026
7
7mer
281-298
0.003
0
RP11-408N14.1
hsa-miR-15a-5p
0.748
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000435092
Biotype: lincRNA
Gene id: ENSG00000236921
Gene Name: RP11-408N14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-390
0.025
0
6mer
380-390
0.003
0
RP11-308N19.1
hsa-miR-15a-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000435485
Biotype: lincRNA
Gene id: ENSG00000234323
Gene Name: RP11-308N19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
608-623
0.028
2
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