LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
AC079779.5
hsa-miR-15a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588842
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
795-820
0.029
1
SNX29P2
hsa-miR-15a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000604430
Biotype: lincRNA
Gene id: ENSG00000198106
Gene Name: SNX29P2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
115-137
0.016
0
7mer
222-239
0.006
1
6mer
4213-4235
0.002
0
6mer
869-895
0.002
1
6mer
4320-4342
0.002
Not Conserved
6mer
565-579
0.002
Not Conserved
TTTY10
hsa-miR-15a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000455084
Biotype: lincRNA
Gene id: ENSG00000229236
Gene Name: TTTY10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1601-1617
0.017
0
6mer
331-349
0.012
0
MIR217HG
hsa-miR-15a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000446139
Biotype: lincRNA
Gene id: ENSG00000226702
Gene Name: MIR217HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
806-826
0.029
4
RP11-340E6.1
hsa-miR-15a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000474979
Biotype: lincRNA
Gene id: ENSG00000242104
Gene Name: RP11-340E6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
947-967
0.023
0
6mer
939-964
0.006
3
MIR519A2
hsa-miR-15a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597619
Biotype: lincRNA
Gene id: ENSG00000269842
Gene Name: MIR519A2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1917-1944
0.029
0
MED14OS
hsa-miR-15a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000456333
Biotype: antisense
Gene id: ENSG00000234636
Gene Name: MED14OS
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
730-750
0.029
2
AC012531.25
hsa-miR-15a-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000562848
Biotype: lincRNA
Gene id: ENSG00000260597
Gene Name: AC012531.25
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2511-2529
0.028
Not Conserved
6mer
1178-1198
0.001
3
RP11-768G7.2
hsa-miR-15a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496994
Biotype: lincRNA
Gene id: ENSG00000241213
Gene Name: RP11-768G7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-224
0.017
5
7mer
195-211
0.012
6
PSMD5-AS1
hsa-miR-15a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000447891
Biotype: antisense
Gene id: ENSG00000226752
Gene Name: PSMD5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3397-3419
0.021
5
7mer
493-513
0.005
0
7mer
852-876
0.003
1
XLOC_013866
hsa-miR-15a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00028969
Biotype: transcript isomorph
Gene id: XLOC_013866
Gene Name: XLOC_013866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2139-2157
0.021
1
7mer
2540-2557
0.008
3
RP11-108K3.2
hsa-miR-15a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559672
Biotype: lincRNA
Gene id: ENSG00000259306
Gene Name: RP11-108K3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
751-774
0.024
1
6mer
142-160
0.004
1
RP11-551L14.4
hsa-miR-15a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000612219
Biotype: antisense
Gene id: ENSG00000226472
Gene Name: RP11-551L14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
206-224
0.026
1
6mer
102-121
0.003
1
LINC00639
hsa-miR-15a-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: NR_039982.1
Biotype: lincRNA
Gene id: NR_039982.1 (gene)
Gene Name: LINC00639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4254-4276
0.011
1
7mer
3846-3871
0.007
0
6mer
434-454
0.003
0
6mer
681-698
0.003
0
7mer
1704-1722
0.002
1
6mer
1432-1450
0.001
0
7mer
1664-1683
0.000
1
6mer
1667-1686
0.000
1
RP11-77K12.8
hsa-miR-15a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564489
Biotype: processed_transcript
Gene id: ENSG00000259992
Gene Name: RP11-77K12.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
622-642
0.021
4
8mer
517-538
0.008
5
RP11-556I14.1
hsa-miR-15a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506386
Biotype: lincRNA
Gene id: ENSG00000248373
Gene Name: RP11-556I14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-102
0.022
0
7mer
101-117
0.007
0
XLOC_005944
hsa-miR-15a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012836
Biotype: transcript isomorph
Gene id: XLOC_005944
Gene Name: XLOC_005944
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
599-616
0.017
0
7mer
907-932
0.008
0
6mer
799-821
0.004
0
INO80B-WBP1
hsa-miR-15a-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037849.1
Biotype: sense
Gene id: NR_037849.1 (gene)
Gene Name: INO80B-WBP1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
718-735
0.011
7
6mer
1216-1240
0.004
6
6mer
1252-1276
0.004
11
6mer
601-620
0.004
4
6mer
1288-1306
0.004
10
6mer
1000-1021
0.002
5
CTC-459F4.3
hsa-miR-15a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586220
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
300-324
0.015
0
6mer
122-146
0.013
0
LOC100506639
hsa-miR-15a-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_102752.1
Biotype: sense
Gene id: NR_102752.1 (gene)
Gene Name: LOC100506639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-222
0.019
0
6mer
631-649
0.010
1
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