LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
CDKN2B-AS1
hsa-miR-15a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000580576
Biotype: antisense
Gene id: ENSG00000240498
Gene Name: CDKN2B-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1506-1523
0.020
1
8mer
49-66
0.006
1
6mer
1866-1889
0.003
1
XLOC_012147
hsa-miR-15a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025335
Biotype: transcript isomorph
Gene id: XLOC_012147
Gene Name: XLOC_012147
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-689
0.027
0
6mer
45-66
0.003
0
RP11-363G10.2
hsa-miR-15a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375625
Biotype: lincRNA
Gene id: ENSG00000179028
Gene Name: RP11-363G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1700-1713
0.026
1
6mer
605-622
0.003
0
AC006227.1
hsa-miR-15a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455614
Biotype: lincRNA
Gene id: ENSG00000229457
Gene Name: AC006227.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
12-30
0.022
0
6mer
48-71
0.004
1
6mer
328-348
0.003
1
RP11-748L13.6
hsa-miR-15a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000568270
Biotype: lincRNA
Gene id: ENSG00000260151
Gene Name: RP11-748L13.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1254-1273
0.017
1
6mer
1293-1302
0.007
1
6mer
192-208
0.005
Not Conserved
AC091814.3
hsa-miR-15a-5p
0.759
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000420905
Biotype: lincRNA
Gene id: ENSG00000231560
Gene Name: AC091814.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
374-401
0.021
1
6mer
1042-1068
0.004
1
6mer
2316-2331
0.002
1
6mer
3677-3695
0.002
Not Conserved
7mer
2314-2326
0.001
1
AC079613.1
hsa-miR-15a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431708
Biotype: sense_overlapping
Gene id: ENSG00000223523
Gene Name: AC079613.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
449-472
0.029
Not Conserved
HCG18
hsa-miR-15a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602290
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
102-122
0.018
1
7mer
684-704
0.009
2
6mer
340-356
0.002
1
C3orf67-AS1
hsa-miR-15a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482372
Biotype: antisense
Gene id: ENSG00000242428
Gene Name: C3orf67-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
13-28
0.026
5
6mer
552-575
0.004
0
XLOC_004231
hsa-miR-15a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008717
Biotype: transcript isomorph
Gene id: XLOC_004231
Gene Name: XLOC_004231
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
39-60
0.017
Not Conserved
7mer
683-704
0.008
0
6mer
156-177
0.004
Not Conserved
RP11-296E23.2
hsa-miR-15a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584331
Biotype: sense_intronic
Gene id: ENSG00000265948
Gene Name: RP11-296E23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
232-254
0.018
1
7mer
299-321
0.012
1
CTB-109A12.1
hsa-miR-15a-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519499
Biotype: sense_overlapping
Gene id: ENSG00000251405
Gene Name: CTB-109A12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
608-622
0.015
1
7mer
611-622
0.010
3
6mer
52-75
0.004
1
LINC01515
hsa-miR-15a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000595269
Biotype: lincRNA
Gene id: ENSG00000228065
Gene Name: LINC01515
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-393
0.029
1
AC005027.3
hsa-miR-15a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416150
Biotype: sense_overlapping
Gene id: ENSG00000236310
Gene Name: AC005027.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
340-363
0.029
5
RP11-507B12.2
hsa-miR-15a-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559783
Biotype: lincRNA
Gene id: ENSG00000259616
Gene Name: RP11-507B12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
516-530
0.024
3
6mer
1195-1216
0.003
1
6mer
768-784
0.003
1
RP11-124N3.2
hsa-miR-15a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000513955
Biotype: lincRNA
Gene id: ENSG00000251487
Gene Name: RP11-124N3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
724-749
0.029
0
XLOC_011202
hsa-miR-15a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023259
Biotype: transcript isomorph
Gene id: XLOC_011202
Gene Name: XLOC_011202
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1813-1829
0.013
1
7mer
1813-1827
0.013
1
6mer
501-516
0.003
1
XLOC_000768
hsa-miR-15a-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001446
Biotype: transcript isomorph
Gene id: XLOC_000768
Gene Name: XLOC_000768
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
649-675
0.022
5
7mer
567-582
0.005
0
6mer
569-582
0.002
0
CTC-472C24.1
hsa-miR-15a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508636
Biotype: lincRNA
Gene id: ENSG00000249150
Gene Name: CTC-472C24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-372
0.029
1
USP2-AS1
hsa-miR-15a-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500970
Biotype: antisense
Gene id: ENSG00000245248
Gene Name: USP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1092-1113
0.011
5
7mer
161-184
0.004
1
7mer
1115-1134
0.004
4
7mer
168-187
0.004
1
6mer
161-181
0.004
1
6mer
778-801
0.003
3
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