LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP11-473L15.3
hsa-miR-15a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505706
Biotype: lincRNA
Gene id: ENSG00000249203
Gene Name: RP11-473L15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
509-530
0.021
4
7mer
507-530
0.009
1
PARD6G-AS1
hsa-miR-15a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588226
Biotype: antisense
Gene id: ENSG00000267270
Gene Name: PARD6G-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
548-571
0.015
1
6mer
809-830
0.007
1
6mer
495-519
0.006
1
6mer
27-44
0.002
Not Conserved
AC104777.4
hsa-miR-15a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110247.1
Biotype: lincRNA
Gene id: NR_110247.1 (gene)
Gene Name: AC104777.4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-174
0.030
1
DKFZp434J0226
hsa-miR-15a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593980
Biotype: lincRNA
Gene id: ENSG00000268460
Gene Name: DKFZp434J0226
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
47-65
0.015
1
7mer
47-62
0.014
1
6mer
601-619
0.001
Not Conserved
RP11-204N11.1
hsa-miR-15a-5p
0.764
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555187
Biotype: lincRNA
Gene id: ENSG00000258869
Gene Name: RP11-204N11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2922-2936
0.011
1
7mer
2919-2936
0.008
1
7mer
2916-2936
0.007
1
6mer
3000-3022
0.005
0
RP11-173P15.7
hsa-miR-15a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542620
Biotype: antisense
Gene id: ENSG00000255946
Gene Name: RP11-173P15.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
459-484
0.021
1
6mer
359-375
0.004
2
6mer
324-345
0.002
0
6mer
70-86
0.002
Not Conserved
XLOC_004804
hsa-miR-15a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010322
Biotype: transcript isomorph
Gene id: XLOC_004804
Gene Name: XLOC_004804
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1520-1536
0.009
0
7mer
2932-2950
0.007
1
7mer
3881-3906
0.006
0
6mer
2478-2497
0.003
1
6mer
1013-1030
0.003
0
6mer
2253-2269
0.002
0
RP4-799P18.3
hsa-miR-15a-5p
0.763
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000446433
Biotype: antisense
Gene id: ENSG00000236244
Gene Name: RP4-799P18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2-17
0.020
1
7mer
5-17
0.010
1
RP11-211C9.1
hsa-miR-15a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519147
Biotype: lincRNA
Gene id: ENSG00000254367
Gene Name: RP11-211C9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2-26
0.030
1
RP11-556I14.1
hsa-miR-15a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506148
Biotype: lincRNA
Gene id: ENSG00000248373
Gene Name: RP11-556I14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
227-238
0.024
0
7mer
237-253
0.006
0
LOC101929681
hsa-miR-15a-5p
0.762
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_104628.1
Biotype: lincRNA
Gene id: NR_104628.1 (gene)
Gene Name: LOC101929681
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
247-270
0.030
0
RP11-38P22.2
hsa-miR-15a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000460407
Biotype: lincRNA
Gene id: ENSG00000241732
Gene Name: RP11-38P22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1269-1291
0.007
2
6mer
1926-1950
0.006
4
6mer
1464-1487
0.005
6
6mer
59-63
0.005
1
6mer
382-402
0.003
3
6mer
1377-1403
0.003
3
AC079779.5
hsa-miR-15a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588334
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
411-436
0.030
1
AC079779.5
hsa-miR-15a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590255
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
433-458
0.030
1
XLOC_011368
hsa-miR-15a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023532
Biotype: transcript isomorph
Gene id: XLOC_011368
Gene Name: XLOC_011368
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3775-3790
0.023
0
7mer
1366-1385
0.007
0
CTD-2503O16.4
hsa-miR-15a-5p
0.761
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505200
Biotype: lincRNA
Gene id: ENSG00000249856
Gene Name: CTD-2503O16.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
497-514
0.015
1
7mer
306-326
0.012
2
6mer
626-647
0.003
1
MIAT
hsa-miR-15a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000613780
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8487-8504
0.007
0
6mer
10078-10096
0.006
2
7mer
1314-1331
0.004
0
6mer
651-676
0.003
1
8mer+wobble
2490-2513
0.002
0
6mer
2705-2729
0.002
0
6mer
8338-8353
0.001
1
6mer
7391-7413
0.001
1
6mer
4117-4138
0.001
1
6mer
1336-1353
0.001
1
GJA9-MYCBP
hsa-miR-15a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_037636.1
Biotype: sense
Gene id: NR_037636.1 (gene)
Gene Name: GJA9-MYCBP
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2328-2346
0.015
5
8mer+wobble
1522-1541
0.005
1
6mer
2300-2323
0.005
6
6mer
87-108
0.004
0
RP11-317P15.4
hsa-miR-15a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000566297
Biotype: lincRNA
Gene id: ENSG00000261504
Gene Name: RP11-317P15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1175-1197
0.017
2
6mer
1110-1130
0.008
4
6mer
370-397
0.005
1
LINC01204
hsa-miR-15a-5p
0.760
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000609127
Biotype: lincRNA
Gene id: ENSG00000229563
Gene Name: LINC01204
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-33
0.024
4
6mer
701-717
0.004
3
6mer
1761-1779
0.002
1
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