LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_009813
hsa-miR-15a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020482
Biotype: transcript isomorph
Gene id: XLOC_009813
Gene Name: XLOC_009813
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
352-370
0.016
5
7mer
755-775
0.015
7
XLOC_003789
hsa-miR-15a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007413
Biotype: transcript isomorph
Gene id: XLOC_003789
Gene Name: XLOC_003789
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2584-2606
0.020
1
7mer
117-137
0.011
0
LINC01515
hsa-miR-15a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000601926
Biotype: lincRNA
Gene id: ENSG00000228065
Gene Name: LINC01515
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-37
0.031
5
RP11-154D6.1
hsa-miR-15a-5p
0.775
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000587397
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
606-630
0.028
1
6mer
402-428
0.003
0
RP11-717D12.1
hsa-miR-15a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000398957
Biotype: sense_intronic
Gene id: ENSG00000214773
Gene Name: RP11-717D12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-247
0.024
3
6mer
253-271
0.004
1
6mer
915-938
0.003
1
AC062029.1
hsa-miR-15a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000606164
Biotype: antisense
Gene id: ENSG00000234028
Gene Name: AC062029.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3336-3353
0.015
0
7mer
3330-3350
0.008
0
6mer
697-718
0.004
2
6mer
3356-3374
0.003
1
LINC00152
hsa-miR-15a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437561
Biotype: lincRNA
Gene id: ENSG00000222041
Gene Name: LINC00152
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
182-201
0.031
1
RP11-641D5.2
hsa-miR-15a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000480669
Biotype: antisense
Gene id: ENSG00000241479
Gene Name: RP11-641D5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
449-473
0.031
1
RP11-154D6.1
hsa-miR-15a-5p
0.774
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000590213
Biotype: antisense
Gene id: ENSG00000232295
Gene Name: RP11-154D6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
433-457
0.028
1
6mer
229-255
0.003
0
MIAT
hsa-miR-15a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616469
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8413-8430
0.009
0
6mer
10004-10022
0.006
2
7mer
1366-1383
0.004
0
6mer
703-728
0.003
1
8mer+wobble
2416-2439
0.002
0
6mer
7317-7339
0.001
1
6mer
2631-2655
0.001
0
6mer
4043-4064
0.001
1
6mer
8264-8279
0.001
1
6mer
1388-1405
0.001
1
AC011899.9
hsa-miR-15a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000438047
Biotype: antisense
Gene id: ENSG00000233038
Gene Name: AC011899.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-405
0.013
1
8mer
3348-3372
0.003
0
6mer
4026-4052
0.003
1
6mer
260-276
0.003
2
6mer
3555-3569
0.003
0
6mer
2313-2330
0.002
0
6mer
724-739
0.002
0
6mer
2854-2874
0.001
0
6mer
2349-2368
0.001
2
MIAT
hsa-miR-15a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000616213
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8287-8304
0.009
0
6mer
9878-9896
0.006
2
7mer
1240-1257
0.005
0
6mer
577-602
0.003
1
8mer+wobble
2290-2313
0.002
0
6mer
3917-3938
0.001
1
6mer
2505-2529
0.001
0
6mer
7191-7213
0.001
1
6mer
8138-8153
0.001
1
6mer
1262-1279
0.001
1
RP11-154H23.3
hsa-miR-15a-5p
0.773
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000604491
Biotype: lincRNA
Gene id: ENSG00000270562
Gene Name: RP11-154H23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1414-1432
0.021
1
7mer
700-726
0.010
2
LOC100505984
hsa-miR-15a-5p
0.772
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_103775.1
Biotype: sense
Gene id: NR_103775.1 (gene)
Gene Name: LOC100505984
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
401-414
0.022
1
7mer
241-259
0.008
4
XLOC_012662
hsa-miR-15a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026325
Biotype: transcript isomorph
Gene id: XLOC_012662
Gene Name: XLOC_012662
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
259-277
0.018
1
7mer
259-279
0.013
1
RP11-344E13.3
hsa-miR-15a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433763
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
629-645
0.019
0
6mer
241-267
0.012
0
SNHG16
hsa-miR-15a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590435
Biotype: lincRNA
Gene id: ENSG00000163597
Gene Name: SNHG16
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
308-328
0.017
1
6mer
1446-1471
0.004
1
6mer
1603-1618
0.004
1
6mer
1859-1867
0.003
1
6mer
207-230
0.002
0
RP11-686D22.9
hsa-miR-15a-5p
0.771
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000587076
Biotype: antisense
Gene id: ENSG00000267349
Gene Name: RP11-686D22.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
373-393
0.031
3
AC079779.5
hsa-miR-15a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591178
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
346-371
0.030
1
CH17-264L24.1
hsa-miR-15a-5p
0.770
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
7272-7287
0.023
0
6mer
2432-2458
0.002
0
6mer
1221-1235
0.002
0
6mer
5816-5832
0.002
0
6mer
3360-3379
0.001
0
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