LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP11-693J15.5
hsa-miR-15a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10284-10309
0.009
1
8mer
10299-10318
0.007
0
7mer
10297-10315
0.004
1
7mer
10293-10312
0.004
1
7mer
8845-8865
0.002
1
6mer
8639-8664
0.002
1
6mer
6786-6809
0.002
2
6mer
7305-7315
0.002
1
6mer
8809-8829
0.001
0
AC023481.1
hsa-miR-15a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000435368
Biotype: lincRNA
Gene id: ENSG00000231401
Gene Name: AC023481.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
477-490
0.012
2
7mer
475-490
0.008
3
7mer
326-341
0.008
1
6mer
758-771
0.004
1
LINC01351
hsa-miR-15a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000436905
Biotype: lincRNA
Gene id: ENSG00000237457
Gene Name: LINC01351
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-200
0.031
1
RP11-699L21.1
hsa-miR-15a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000397645
Biotype: lincRNA
Gene id: ENSG00000214146
Gene Name: RP11-699L21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1394-1399
0.019
3
8mer
1533-1553
0.009
1
6mer
1208-1227
0.003
1
MIAT
hsa-miR-15a-5p
0.780
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000620145
Biotype: lincRNA
Gene id: ENSG00000225783
Gene Name: MIAT
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8413-8430
0.009
0
6mer
10004-10022
0.006
2
7mer
1240-1257
0.005
0
6mer
577-602
0.003
1
8mer+wobble
2416-2439
0.002
0
6mer
7317-7339
0.001
1
6mer
2631-2655
0.001
0
6mer
4043-4064
0.001
1
6mer
8264-8279
0.001
1
6mer
1262-1279
0.001
1
XLOC_013448
hsa-miR-15a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028098
Biotype: transcript isomorph
Gene id: XLOC_013448
Gene Name: XLOC_013448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-198
0.013
1
6mer
756-779
0.011
2
6mer
803-821
0.008
1
LOC90246
hsa-miR-15a-5p
0.779
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_026954.1
Biotype: lincRNA
Gene id: NR_026954.1 (gene)
Gene Name: LOC90246
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2549-2557
0.017
0
6mer
2193-2210
0.005
1
7mer
1716-1727
0.004
0
6mer
1943-1966
0.003
0
6mer
1517-1536
0.002
0
ZSCAN16-AS1
hsa-miR-15a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602810
Biotype: antisense
Gene id: ENSG00000269293
Gene Name: ZSCAN16-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1196-1218
0.031
1
AC007952.6
hsa-miR-15a-5p
0.778
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000399083
Biotype: antisense
Gene id: ENSG00000197665
Gene Name: AC007952.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1004-1025
0.016
1
8mer
978-1004
0.015
0
LINC00938
hsa-miR-15a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
233-254
0.014
1
7mer
4897-4919
0.006
0
6mer
2641-2662
0.003
5
6mer
6257-6271
0.002
4
6mer
9016-9034
0.002
0
6mer
7214-7229
0.002
1
7mer
9014-9034
0.001
0
6mer
2578-2594
0.001
2
AC011330.13
hsa-miR-15a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000621680
Biotype: sense_intronic
Gene id: ENSG00000275601
Gene Name: AC011330.13
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-444
0.026
1
6mer
406-422
0.005
1
CTA-941F9.10
hsa-miR-15a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623075
Biotype: sense_overlapping
Gene id: ENSG00000280383
Gene Name: CTA-941F9.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20293-20315
0.011
1
9mer
20846-20865
0.005
0
7mer
20134-20156
0.005
0
7mer
5659-5672
0.002
1
6mer
6788-6810
0.002
1
6mer
5545-5571
0.002
0
6mer
21488-21510
0.001
1
6mer
16388-16411
0.001
1
6mer
13255-13280
0.001
0
AC104777.4
hsa-miR-15a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_110245.1
Biotype: lincRNA
Gene id: NR_110245.1 (gene)
Gene Name: AC104777.4
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
158-174
0.031
1
RP11-23J9.4
hsa-miR-15a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000529787
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-291
0.019
7
6mer
296-320
0.006
7
6mer
4774-4799
0.004
7
6mer
1817-1842
0.003
7
RP11-203B7.2
hsa-miR-15a-5p
0.777
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000570186
Biotype: lincRNA
Gene id: ENSG00000260303
Gene Name: RP11-203B7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3732-3748
0.016
2
8mer
849-865
0.014
1
6mer
1395-1414
0.001
0
LINC01351
hsa-miR-15a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424735
Biotype: lincRNA
Gene id: ENSG00000237457
Gene Name: LINC01351
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-254
0.031
1
MGC16025
hsa-miR-15a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_026664.1
Biotype: sense
Gene id: NR_026664.1 (gene)
Gene Name: MGC16025
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1944-1962
0.014
0
7mer
361-379
0.007
1
7mer
359-379
0.004
1
6mer
1692-1706
0.003
0
6mer
337-351
0.002
0
6mer
1248-1262
0.002
0
RP11-856M7.4
hsa-miR-15a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579413
Biotype: lincRNA
Gene id: ENSG00000264072
Gene Name: RP11-856M7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
296-311
0.031
0
CTA-280A3.1
hsa-miR-15a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623467
Biotype: lincRNA
Gene id: ENSG00000279888
Gene Name: CTA-280A3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
60-73
0.028
2
6mer
80-91
0.003
0
XLOC_001666
hsa-miR-15a-5p
0.776
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00002721
Biotype: transcript isomorph
Gene id: XLOC_001666
Gene Name: XLOC_001666
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1017-1029
0.013
1
6mer
1002-1013
0.006
1
6mer
865-878
0.005
1
6mer
222-247
0.004
0
6mer
168-185
0.003
0
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