LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP5-991G20.2
hsa-miR-15a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000558618
Biotype: antisense
Gene id: ENSG00000259209
Gene Name: RP5-991G20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
444-460
0.032
4
RP11-124O11.1
hsa-miR-15a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421320
Biotype: lincRNA
Gene id: ENSG00000234944
Gene Name: RP11-124O11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
470-487
0.017
1
7mer
125-140
0.010
1
6mer
337-353
0.003
1
6mer
821-842
0.001
1
AC005154.6
hsa-miR-15a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2002-2024
0.006
0
7mer
4831-4852
0.005
1
8mer
10629-10648
0.004
1
7mer
2464-2477
0.004
0
6mer
457-474
0.003
2
7mer
10112-10138
0.003
1
6mer
8061-8073
0.002
2
6mer
9833-9856
0.002
0
6mer
4905-4918
0.001
1
6mer
13150-13176
0.001
1
7mer
10627-10648
0.001
1
VIM-AS1
hsa-miR-15a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000605833
Biotype: antisense
Gene id: ENSG00000229124
Gene Name: VIM-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
730-749
0.021
12
6mer
763-789
0.007
8
6mer
570-595
0.004
8
HECW1-IT1
hsa-miR-15a-5p
0.786
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000322220
Biotype: sense_intronic
Gene id: ENSG00000181211
Gene Name: HECW1-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1335-1360
0.032
3
XLOC_005311
hsa-miR-15a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011825
Biotype: transcript isomorph
Gene id: XLOC_005311
Gene Name: XLOC_005311
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
142-165
0.032
1
AC079779.5
hsa-miR-15a-5p
0.785
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000592090
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
281-306
0.032
1
XLOC_010725
hsa-miR-15a-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022315
Biotype: transcript isomorph
Gene id: XLOC_010725
Gene Name: XLOC_010725
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-568
0.016
1
7mer
258-276
0.012
1
7mer
2344-2365
0.004
Not Conserved
PDXDC2P
hsa-miR-15a-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000529089
Biotype: processed_transcript
Gene id: ENSG00000196696
Gene Name: PDXDC2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
996-1014
0.020
6
8mer
993-1014
0.012
5
RP11-768G7.2
hsa-miR-15a-5p
0.784
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000462528
Biotype: lincRNA
Gene id: ENSG00000241213
Gene Name: RP11-768G7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-382
0.018
5
7mer
353-369
0.014
6
XLOC_012427
hsa-miR-15a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025599
Biotype: transcript isomorph
Gene id: XLOC_012427
Gene Name: XLOC_012427
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
625-642
0.027
0
7mer
3019-3039
0.005
Not Conserved
XLOC_001397
hsa-miR-15a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003602
Biotype: transcript isomorph
Gene id: XLOC_001397
Gene Name: XLOC_001397
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-82
0.020
Not Conserved
7mer
62-79
0.012
Not Conserved
LINC00511
hsa-miR-15a-5p
0.783
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578206
Biotype: lincRNA
Gene id: ENSG00000227036
Gene Name: LINC00511
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
788-805
0.016
1
8mer
14-41
0.016
0
RP11-497G19.7
hsa-miR-15a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621942
Biotype: lincRNA
Gene id: ENSG00000275898
Gene Name: RP11-497G19.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-270
0.025
1
6mer
885-903
0.004
1
6mer
1941-1964
0.003
1
MIR202HG
hsa-miR-15a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000300167
Biotype: antisense
Gene id: ENSG00000166917
Gene Name: MIR202HG
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-34
0.013
Not Conserved
7mer
19-44
0.011
1
7mer
16-42
0.007
Not Conserved
RP11-551L14.4
hsa-miR-15a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613860
Biotype: antisense
Gene id: ENSG00000226472
Gene Name: RP11-551L14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
150-168
0.026
1
6mer
46-65
0.003
1
6mer
448-470
0.002
2
PDXDC2P
hsa-miR-15a-5p
0.782
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000531894
Biotype: processed_transcript
Gene id: ENSG00000196696
Gene Name: PDXDC2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3470-3488
0.018
6
8mer
3467-3488
0.010
5
6mer
491-511
0.003
Not Conserved
RP4-583K8.1
hsa-miR-15a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000414598
Biotype: lincRNA
Gene id: ENSG00000225785
Gene Name: RP4-583K8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-138
0.016
6
7mer
235-256
0.005
2
7mer
238-256
0.004
0
7mer
241-261
0.004
0
6mer
244-261
0.003
1
RP11-114G22.1
hsa-miR-15a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536744
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
354-377
0.014
4
7mer
368-390
0.012
5
6mer
442-467
0.005
4
RP11-415J8.3
hsa-miR-15a-5p
0.781
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000624453
Biotype: antisense
Gene id: ENSG00000225313
Gene Name: RP11-415J8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-42
0.015
6
7mer
174-188
0.013
1
6mer
390-413
0.004
0
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