LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP4-769N13.6
hsa-miR-15a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000486740
Biotype: processed_transcript
Gene id: ENSG00000271147
Gene Name: RP4-769N13.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
578-597
0.018
5
7mer
96-117
0.011
1
6mer
558-573
0.005
2
RP11-156P1.3
hsa-miR-15a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575173
Biotype: lincRNA
Gene id: ENSG00000262879
Gene Name: RP11-156P1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-425
0.016
0
7mer
223-248
0.005
0
6mer
947-962
0.004
0
7mer
225-248
0.004
0
6mer
228-248
0.003
0
AC009495.3
hsa-miR-15a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457108
Biotype: lincRNA
Gene id: ENSG00000232411
Gene Name: AC009495.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
386-405
0.033
0
AC093323.3
hsa-miR-15a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000444232
Biotype: lincRNA
Gene id: ENSG00000170846
Gene Name: AC093323.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-67
0.008
0
7mer
53-69
0.008
0
8mer
1095-1120
0.007
1
6mer
1443-1460
0.003
1
6mer
891-911
0.003
1
6mer
692-714
0.003
0
6mer
1220-1234
0.001
0
SCGB1B2P
hsa-miR-15a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000597830
Biotype: lincRNA
Gene id: ENSG00000268751
Gene Name: SCGB1B2P
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
121-137
0.033
2
XLOC_005521
hsa-miR-15a-5p
0.796
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012006
Biotype: transcript isomorph
Gene id: XLOC_005521
Gene Name: XLOC_005521
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
551-568
0.026
1
6mer
295-315
0.007
1
CTA-992D9.6
hsa-miR-15a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000453934
Biotype: lincRNA
Gene id: ENSG00000236858
Gene Name: CTA-992D9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2214-2237
0.017
4
7mer
176-200
0.012
1
6mer
2086-2101
0.004
1
XLOC_011413
hsa-miR-15a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023601
Biotype: transcript isomorph
Gene id: XLOC_011413
Gene Name: XLOC_011413
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1522-1531
0.010
1
8mer
2231-2247
0.009
1
7mer
2372-2391
0.007
2
7mer
1918-1938
0.004
1
6mer
2197-2211
0.003
1
RP11-415J8.3
hsa-miR-15a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457957
Biotype: antisense
Gene id: ENSG00000225313
Gene Name: RP11-415J8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
23-41
0.017
6
7mer
307-321
0.012
1
6mer
523-546
0.003
0
RP11-588H23.3
hsa-miR-15a-5p
0.795
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548924
Biotype: antisense
Gene id: ENSG00000258168
Gene Name: RP11-588H23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-468
0.027
1
6mer
366-386
0.006
1
CTD-2297D10.2
hsa-miR-15a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512155
Biotype: antisense
Gene id: ENSG00000250579
Gene Name: CTD-2297D10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
117-137
0.015
0
7mer
571-593
0.009
0
7mer
622-644
0.004
0
7mer
415-434
0.003
0
6mer
97-115
0.002
0
XLOC_006122
hsa-miR-15a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013474
Biotype: transcript isomorph
Gene id: XLOC_006122
Gene Name: XLOC_006122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
805-822
0.021
1
6mer
584-604
0.011
1
XLOC_005715
hsa-miR-15a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012166
Biotype: transcript isomorph
Gene id: XLOC_005715
Gene Name: XLOC_005715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
528-551
0.030
1
6mer
2237-2254
0.003
4
RP11-486L19.2
hsa-miR-15a-5p
0.794
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000536986
Biotype: antisense
Gene id: ENSG00000250685
Gene Name: RP11-486L19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1336-1351
0.024
2
6mer
2449-2474
0.006
4
6mer
2171-2192
0.003
2
CTA-292E10.9
hsa-miR-15a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
209-226
0.010
0
7mer
14759-14776
0.009
9
7mer
8947-8969
0.003
2
6mer
3214-3235
0.002
4
6mer
10742-10761
0.002
3
6mer
17687-17707
0.001
1
6mer
15105-15123
0.001
2
6mer
5154-5172
0.001
0
6mer
961-981
0.001
0
6mer
19674-19692
0.001
0
6mer
1832-1853
0.001
Not Conserved
6mer
20346-20364
0.001
0
RP11-755E23.3
hsa-miR-15a-5p
0.793
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000531846
Biotype: lincRNA
Gene id: ENSG00000255233
Gene Name: RP11-755E23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
350-365
0.033
2
RP11-103J8.2
hsa-miR-15a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000605338
Biotype: lincRNA
Gene id: ENSG00000270777
Gene Name: RP11-103J8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-205
0.033
1
MALAT1
hsa-miR-15a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000616527
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
495-519
0.033
8
CTD-3148I10.15
hsa-miR-15a-5p
0.792
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595815
Biotype: processed_transcript
Gene id: ENSG00000273189
Gene Name: CTD-3148I10.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
629-646
0.008
5
7mer
101-124
0.006
2
7mer
101-127
0.006
3
7mer
116-130
0.005
1
7mer
650-667
0.004
5
7mer
746-765
0.003
1
CTD-2306M10.1
hsa-miR-15a-5p
0.791
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602471
Biotype: lincRNA
Gene id: ENSG00000270107
Gene Name: CTD-2306M10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-363
0.017
6
6mer
430-450
0.009
8
7mer
526-542
0.007
1
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