LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
SNHG1
hsa-miR-15a-5p
0.803
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540865
Biotype: retained_intron
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
443-464
0.024
1
7mer
323-348
0.010
0
RP11-91P17.1
hsa-miR-15a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521879
Biotype: lincRNA
Gene id: ENSG00000254001
Gene Name: RP11-91P17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-31
0.015
1
7mer
11-29
0.015
1
6mer
326-341
0.003
0
RP11-112H10.4
hsa-miR-15a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580589
Biotype: antisense
Gene id: ENSG00000264672
Gene Name: RP11-112H10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
551-572
0.030
1
6mer
289-303
0.003
4
RP11-933H2.4
hsa-miR-15a-5p
0.802
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000511699
Biotype: retained_intron
Gene id: ENSG00000250608
Gene Name: RP11-933H2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-122
0.025
1
6mer
559-585
0.005
1
6mer
290-300
0.003
1
LINC01019
hsa-miR-15a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505443
Biotype: lincRNA
Gene id: ENSG00000248118
Gene Name: LINC01019
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-246
0.013
1
7mer
2569-2584
0.008
2
7mer
2862-2876
0.005
0
6mer
2952-2967
0.003
1
6mer
3130-3150
0.002
0
7mer
2504-2518
0.002
Not Conserved
RP5-1028K7.2
hsa-miR-15a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578280
Biotype: lincRNA
Gene id: ENSG00000266088
Gene Name: RP5-1028K7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
147-171
0.023
1
6mer
875-887
0.008
5
6mer
485-498
0.003
2
RP11-415J8.3
hsa-miR-15a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000588828
Biotype: antisense
Gene id: ENSG00000225313
Gene Name: RP11-415J8.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-46
0.017
6
7mer
607-621
0.016
1
RP4-671O14.7
hsa-miR-15a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17971-17989
0.012
1
7mer
6157-6172
0.005
Not Conserved
7mer
4153-4168
0.004
1
8mer
3811-3825
0.004
1
7mer
8172-8196
0.002
1
6mer
4365-4389
0.002
3
6mer
10446-10458
0.002
1
6mer
1311-1330
0.001
1
6mer
11914-11929
0.001
1
AP001046.5
hsa-miR-15a-5p
0.801
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000442815
Biotype: lincRNA
Gene id: ENSG00000237989
Gene Name: AP001046.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2435-2453
0.007
1
7mer
825-844
0.007
1
6mer
107-129
0.004
1
7mer
1507-1520
0.004
Not Conserved
6mer
565-581
0.004
1
7mer
1691-1708
0.002
0
6mer
2502-2522
0.002
0
6mer
1746-1771
0.002
1
6mer
740-754
0.001
0
CTA-414D7.1
hsa-miR-15a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623440
Biotype: sense_intronic
Gene id: ENSG00000279175
Gene Name: CTA-414D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
288-309
0.012
2
7mer
8217-8236
0.007
1
6mer
219-245
0.006
1
7mer
9281-9306
0.004
1
7mer
2752-2766
0.002
0
6mer
340-366
0.002
Not Conserved
6mer
1256-1278
0.001
0
HAND2-AS1
hsa-miR-15a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512099
Biotype: antisense
Gene id: ENSG00000237125
Gene Name: HAND2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-81
0.028
12
6mer
1685-1705
0.003
3
6mer
1599-1620
0.002
0
RP11-57P19.1
hsa-miR-15a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560391
Biotype: lincRNA
Gene id: ENSG00000259331
Gene Name: RP11-57P19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-510
0.033
3
IQCF5-AS1
hsa-miR-15a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000440723
Biotype: antisense
Gene id: ENSG00000235455
Gene Name: IQCF5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1955-1975
0.029
1
6mer
816-832
0.002
1
6mer
1534-1550
0.002
0
XLOC_003447
hsa-miR-15a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008751
Biotype: transcript isomorph
Gene id: XLOC_003447
Gene Name: XLOC_003447
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
144-166
0.033
1
RP11-570L15.2
hsa-miR-15a-5p
0.800
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000546678
Biotype: antisense
Gene id: ENSG00000257640
Gene Name: RP11-570L15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
93-108
0.033
6
AC005154.6
hsa-miR-15a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454922
Biotype: antisense
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
369-385
0.029
1
6mer
1179-1203
0.005
0
AC020956.3
hsa-miR-15a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614316
Biotype: lincRNA
Gene id: ENSG00000278239
Gene Name: AC020956.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
585-607
0.033
1
RP11-1129I3.1
hsa-miR-15a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562300
Biotype: sense_overlapping
Gene id: ENSG00000260392
Gene Name: RP11-1129I3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-84
0.016
1
8mer+wobble
446-467
0.012
1
6mer
544-565
0.005
3
LINC01128
hsa-miR-15a-5p
0.799
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608189
Biotype: lincRNA
Gene id: ENSG00000228794
Gene Name: LINC01128
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
447-467
0.018
2
7mer
571-591
0.012
1
6mer
71-94
0.003
0
CTC-327F10.5
hsa-miR-15a-5p
0.797
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512300
Biotype: antisense
Gene id: ENSG00000248362
Gene Name: CTC-327F10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
209-221
0.033
0
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