LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
LINC00520
hsa-miR-15a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554186
Biotype: lincRNA
Gene id: ENSG00000258791
Gene Name: LINC00520
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Kidney Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
55-79
0.030
2
6mer
79-104
0.005
1
LL22NC03-22D1.1
hsa-miR-15a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
23716-23741
0.017
1
7mer
7619-7638
0.004
1
7mer
23817-23835
0.003
1
6mer
8212-8230
0.002
4
6mer
16589-16602
0.002
2
6mer
2318-2345
0.001
1
6mer
25617-25632
0.001
1
6mer
5449-5468
0.001
0
6mer
27419-27431
0.001
0
6mer
11517-11534
0.001
Not Conserved
CHKB-CPT1B
hsa-miR-15a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_027928.2
Biotype: sense
Gene id: NR_027928.2 (gene)
Gene Name: CHKB-CPT1B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
801-825
0.009
1
7mer
3308-3334
0.008
5
7mer
246-262
0.006
2
6mer
3804-3825
0.004
5
8mer+mismatch
1788-1807
0.003
7
6mer
2316-2332
0.002
5
6mer
1376-1398
0.002
2
6mer
1362-1388
0.001
9
6mer
2307-2325
0.000
0
XLOC_001614
hsa-miR-15a-5p
0.814
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003812
Biotype: transcript isomorph
Gene id: XLOC_001614
Gene Name: XLOC_001614
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
16-37
0.017
0
7mer
16-34
0.010
0
7mer
80-102
0.008
0
USP27X-AS1
hsa-miR-15a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000437322
Biotype: lincRNA
Gene id: ENSG00000234390
Gene Name: USP27X-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
949-975
0.012
3
6mer
2035-2050
0.005
1
7mer
952-979
0.004
4
7mer
961-979
0.003
0
7mer
1870-1880
0.003
0
7mer
955-979
0.002
2
7mer
958-979
0.002
2
6mer
1522-1547
0.002
2
6mer
1424-1449
0.002
1
CTC-203F4.2
hsa-miR-15a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000602502
Biotype: antisense
Gene id: ENSG00000270021
Gene Name: CTC-203F4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1901-1919
0.021
1
7mer
1901-1916
0.006
1
7mer
1888-1913
0.005
1
6mer
1888-1910
0.002
0
RP5-991G20.2
hsa-miR-15a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000620814
Biotype: antisense
Gene id: ENSG00000259209
Gene Name: RP5-991G20.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-285
0.028
4
6mer
476-500
0.006
1
XLOC_011616
hsa-miR-15a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023843
Biotype: transcript isomorph
Gene id: XLOC_011616
Gene Name: XLOC_011616
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4662-4682
0.020
1
7mer
4844-4868
0.008
1
7mer
2299-2324
0.003
1
6mer
4063-4088
0.002
1
6mer
963-987
0.002
0
XLOC_004306
hsa-miR-15a-5p
0.812
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009885
Biotype: transcript isomorph
Gene id: XLOC_004306
Gene Name: XLOC_004306
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-512
0.021
0
7mer
13-29
0.008
Not Conserved
7mer
13-31
0.005
Not Conserved
RP11-550A5.2
hsa-miR-15a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000526947
Biotype: antisense
Gene id: ENSG00000254431
Gene Name: RP11-550A5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
642-661
0.035
0
RP11-310E22.4
hsa-miR-15a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000451737
Biotype: antisense
Gene id: ENSG00000234026
Gene Name: RP11-310E22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-92
0.035
1
AC006460.2
hsa-miR-15a-5p
0.811
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000421437
Biotype: antisense
Gene id: ENSG00000228509
Gene Name: AC006460.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
577-593
0.030
8
6mer
270-295
0.005
1
LINC00400
hsa-miR-15a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000425609
Biotype: lincRNA
Gene id: ENSG00000229928
Gene Name: LINC00400
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
242-260
0.034
3
XLOC_010811
hsa-miR-15a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022976
Biotype: transcript isomorph
Gene id: XLOC_010811
Gene Name: XLOC_010811
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
925-939
0.034
1
RP11-208N14.4
hsa-miR-15a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000356133
Biotype: antisense
Gene id: ENSG00000198491
Gene Name: RP11-208N14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-133
0.029
6
6mer
1555-1574
0.005
9
MIR4435-1HG
hsa-miR-15a-5p
0.810
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419736
Biotype: lincRNA
Gene id: ENSG00000172965
Gene Name: MIR4435-1HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
503-522
0.028
1
6mer
720-742
0.006
3
RP5-1023B21.1
hsa-miR-15a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000596207
Biotype: lincRNA
Gene id: ENSG00000267857
Gene Name: RP5-1023B21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
529-553
0.012
4
7mer
526-546
0.009
3
7mer
523-544
0.008
3
6mer
532-553
0.004
2
XLOC_013043
hsa-miR-15a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026996
Biotype: transcript isomorph
Gene id: XLOC_013043
Gene Name: XLOC_013043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1086-1108
0.030
1
6mer
123-138
0.003
1
6mer
1972-1995
0.002
0
RP11-64C1.1
hsa-miR-15a-5p
0.809
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492683
Biotype: lincRNA
Gene id: ENSG00000240708
Gene Name: RP11-64C1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-360
0.024
3
7mer
861-885
0.011
1
RP11-627G23.1
hsa-miR-15a-5p
0.808
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532886
Biotype: retained_intron
Gene id: ENSG00000255545
Gene Name: RP11-627G23.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4403-4424
0.027
3
6mer
738-757
0.002
1
6mer
3275-3294
0.002
Not Conserved
7mer
2217-2240
0.001
2
6mer
2561-2581
0.001
1
6mer
1925-1942
0.001
1
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