LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
AC004447.2
hsa-miR-15a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594142
Biotype: antisense
Gene id: ENSG00000269131
Gene Name: AC004447.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2288-2312
0.036
1
SLC16A1-AS1
hsa-miR-15a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103743.1
Biotype: antisense
Gene id: NR_103743.1 (gene)
Gene Name: SLC16A1-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1313-1329
0.032
1
7mer
1023-1044
0.004
0
RP11-408E5.5
hsa-miR-15a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437057
Biotype: lincRNA
Gene id: ENSG00000232243
Gene Name: RP11-408E5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
228-250
0.036
3
RP11-14C10.4
hsa-miR-15a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000610780
Biotype: lincRNA
Gene id: ENSG00000277210
Gene Name: RP11-14C10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1981-2007
0.015
1
8mer
632-657
0.014
Not Conserved
6mer
121-146
0.004
1
6mer
2238-2256
0.003
1
RP4-769N13.6
hsa-miR-15a-5p
0.827
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602463
Biotype: processed_transcript
Gene id: ENSG00000271147
Gene Name: RP4-769N13.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
539-558
0.021
5
7mer
115-136
0.010
1
6mer
519-534
0.005
2
RP11-1000B6.7
hsa-miR-15a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000616244
Biotype: sense_intronic
Gene id: ENSG00000276724
Gene Name: RP11-1000B6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
149-174
0.036
0
CTD-2058B24.2
hsa-miR-15a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554687
Biotype: antisense
Gene id: ENSG00000259048
Gene Name: CTD-2058B24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
291-304
0.020
0
7mer
558-583
0.016
Not Conserved
XLOC_002601
hsa-miR-15a-5p
0.826
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00005968
Biotype: transcript isomorph
Gene id: XLOC_002601
Gene Name: XLOC_002601
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
269-284
0.022
3
7mer
257-281
0.009
1
6mer
78-101
0.006
1
ABHD14A-ACY1
hsa-miR-15a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037192.1
Biotype: sense
Gene id: NR_037192.1 (gene)
Gene Name: ABHD14A-ACY1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
387-408
0.012
5
7mer
221-240
0.010
5
8mer
1617-1640
0.009
4
6mer
116-135
0.003
4
6mer
604-627
0.002
3
RP11-672F9.1
hsa-miR-15a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000450980
Biotype: lincRNA
Gene id: ENSG00000226113
Gene Name: RP11-672F9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-42
0.036
6
PPP3CB-AS1
hsa-miR-15a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000600206
Biotype: antisense
Gene id: ENSG00000221817
Gene Name: PPP3CB-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
624-647
0.019
7
7mer
624-650
0.012
7
6mer
612-632
0.005
6
LINC00152
hsa-miR-15a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419680
Biotype: lincRNA
Gene id: ENSG00000222041
Gene Name: LINC00152
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
256-275
0.029
1
6mer
36-58
0.007
2
RP11-49K24.4
hsa-miR-15a-5p
0.825
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000592747
Biotype: antisense
Gene id: ENSG00000266957
Gene Name: RP11-49K24.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-105
0.036
10
RP11-114G22.1
hsa-miR-15a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000413794
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
275-298
0.015
4
7mer
289-311
0.014
5
6mer
363-388
0.007
4
SOX9-AS1
hsa-miR-15a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000446332
Biotype: lincRNA
Gene id: ENSG00000234899
Gene Name: SOX9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
300-323
0.021
1
7mer
303-323
0.011
1
6mer
414-439
0.004
1
RP11-412B14.1
hsa-miR-15a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000527318
Biotype: antisense
Gene id: ENSG00000255101
Gene Name: RP11-412B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
88-105
0.036
0
RP11-15B17.1
hsa-miR-15a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515026
Biotype: antisense
Gene id: ENSG00000245322
Gene Name: RP11-15B17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
674-692
0.019
5
7mer
21-45
0.009
0
7mer
17-43
0.008
Not Conserved
XLOC_005365
hsa-miR-15a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011333
Biotype: transcript isomorph
Gene id: XLOC_005365
Gene Name: XLOC_005365
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
990-1015
0.030
1
8mer
1015-1037
0.006
0
AC017048.2
hsa-miR-15a-5p
0.824
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000431455
Biotype: lincRNA
Gene id: ENSG00000236231
Gene Name: AC017048.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
789-810
0.024
4
7mer
268-285
0.007
1
6mer
349-364
0.005
4
NDUFA6-AS1
hsa-miR-15a-5p
0.823
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000451451
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
570-593
0.015
1
7mer
570-590
0.012
2
7mer
327-352
0.005
0
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