LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_010672
hsa-miR-15a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00022068
Biotype: transcript isomorph
Gene id: XLOC_010672
Gene Name: XLOC_010672
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-43
0.021
2
7mer
578-594
0.017
0
MIA-RAB4B
hsa-miR-15a-5p
0.835
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: NR_037775.1
Biotype: sense
Gene id: NR_037775.1 (gene)
Gene Name: MIA-RAB4B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1182-1202
0.014
8
7mer
1189-1204
0.014
8
6mer
988-1002
0.005
7
6mer
274-299
0.004
3
TTC28-AS1
hsa-miR-15a-5p
0.834
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000433317
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-199
0.016
6
9mer
2424-2443
0.011
1
7mer
1507-1523
0.007
10
6mer
2366-2387
0.003
Not Conserved
C1orf220
hsa-miR-15a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000521244
Biotype: lincRNA
Gene id: ENSG00000213057
Gene Name: C1orf220
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1019-1035
0.015
1
8mer
682-696
0.011
0
6mer
106-122
0.005
2
6mer
254-272
0.003
1
6mer
1127-1152
0.002
1
6mer
777-799
0.001
0
CTC-523E23.6
hsa-miR-15a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595783
Biotype: lincRNA
Gene id: ENSG00000269037
Gene Name: CTC-523E23.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
718-739
0.013
1
7mer
873-894
0.009
2
6mer
35-44
0.008
2
6mer
1593-1608
0.005
1
6mer
855-879
0.002
1
LINC01140
hsa-miR-15a-5p
0.833
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000469312
Biotype: lincRNA
Gene id: ENSG00000267272
Gene Name: LINC01140
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
500-514
0.032
1
6mer
126-148
0.003
1
6mer
232-244
0.003
1
RP11-216M21.7
hsa-miR-15a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
614-636
0.029
0
6mer
2331-2356
0.008
0
XLOC_010799
hsa-miR-15a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022470
Biotype: transcript isomorph
Gene id: XLOC_010799
Gene Name: XLOC_010799
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
252-271
0.015
13
6mer
6-32
0.010
11
7mer
567-581
0.008
1
6mer
894-913
0.004
2
RP11-100G15.10
hsa-miR-15a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000415471
Biotype: lincRNA
Gene id: ENSG00000236717
Gene Name: RP11-100G15.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-63
0.037
0
RP11-308N19.1
hsa-miR-15a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000425709
Biotype: lincRNA
Gene id: ENSG00000234323
Gene Name: RP11-308N19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
235-250
0.037
2
RP3-455J7.4
hsa-miR-15a-5p
0.832
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000451992
Biotype: antisense
Gene id: ENSG00000241666
Gene Name: RP3-455J7.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
828-850
0.008
8
7mer
720-740
0.007
1
7mer
1581-1605
0.006
2
6mer
2081-2090
0.004
2
6mer
481-500
0.004
2
6mer
1905-1923
0.003
3
6mer
1149-1170
0.002
1
6mer
1648-1666
0.002
1
6mer
1399-1416
0.002
3
LL22NC03-86G7.1
hsa-miR-15a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000458178
Biotype: antisense
Gene id: ENSG00000224086
Gene Name: LL22NC03-86G7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
19892-19913
0.005
14
7mer
5290-5315
0.004
0
8mer
23942-23956
0.003
0
6mer
37625-37639
0.002
Not Conserved
6mer
36957-36978
0.002
0
6mer
778-792
0.002
1
6mer
3769-3782
0.002
0
7mer
2861-2877
0.001
2
6mer
13725-13729
0.001
1
6mer
6226-6243
0.001
4
6mer
33131-33153
0.001
4
6mer
24211-24234
0.001
3
6mer
27405-27430
0.001
1
6mer
34724-34741
0.001
3
6mer
25285-25302
0.001
1
6mer
15054-15077
0.001
0
6mer
6869-6894
0.001
1
6mer
25424-25444
0.001
1
6mer
24665-24687
0.001
0
6mer
26649-26674
0.001
1
6mer
4569-4588
0.001
0
6mer
13043-13068
0.001
Not Conserved
6mer
26675-26687
0.000
1
XLOC_007383
hsa-miR-15a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015999
Biotype: transcript isomorph
Gene id: XLOC_007383
Gene Name: XLOC_007383
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
996-1017
0.007
Not Conserved
7mer
187-211
0.005
Not Conserved
6mer
91-112
0.004
Not Conserved
7mer
425-444
0.003
Not Conserved
6mer
235-256
0.002
Not Conserved
6mer
612-633
0.002
Not Conserved
6mer
708-729
0.002
Not Conserved
6mer
948-969
0.002
Not Conserved
6mer
804-825
0.002
Not Conserved
6mer
852-873
0.002
Not Conserved
6mer
900-921
0.002
Not Conserved
6mer
1186-1212
0.002
Not Conserved
6mer
1138-1164
0.001
Not Conserved
6mer
1092-1116
0.001
Not Conserved
RP11-326N17.2
hsa-miR-15a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000612997
Biotype: lincRNA
Gene id: ENSG00000274281
Gene Name: RP11-326N17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
781-796
0.037
0
RP11-43F13.4
hsa-miR-15a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606540
Biotype: lincRNA
Gene id: ENSG00000272347
Gene Name: RP11-43F13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1547-1568
0.029
0
6mer
1291-1317
0.005
0
6mer
280-304
0.003
1
CTD-2010I22.2
hsa-miR-15a-5p
0.831
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506492
Biotype: lincRNA
Gene id: ENSG00000248391
Gene Name: CTD-2010I22.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-44
0.037
0
SIRPG-AS1
hsa-miR-15a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000456177
Biotype: antisense
Gene id: ENSG00000237914
Gene Name: SIRPG-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2502-2518
0.022
0
7mer
781-801
0.006
0
7mer
2009-2035
0.005
0
6mer
279-301
0.004
0
XLOC_000482
hsa-miR-15a-5p
0.830
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001215
Biotype: transcript isomorph
Gene id: XLOC_000482
Gene Name: XLOC_000482
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
50-71
0.025
0
7mer
50-68
0.011
0
LINC01354
hsa-miR-15a-5p
0.829
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435574
Biotype: lincRNA
Gene id: ENSG00000231768
Gene Name: LINC01354
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
674-680
0.022
2
7mer
1473-1497
0.008
5
6mer
791-806
0.004
3
6mer
1906-1925
0.002
0
RP11-955H22.1
hsa-miR-15a-5p
0.828
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536330
Biotype: lincRNA
Gene id: ENSG00000256292
Gene Name: RP11-955H22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-204
0.030
1
6mer
58-76
0.006
1
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