LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_004712
hsa-miR-15a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009219
Biotype: transcript isomorph
Gene id: XLOC_004712
Gene Name: XLOC_004712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
220-245
0.014
1
7mer
2861-2878
0.010
1
7mer
2568-2583
0.007
2
6mer
3018-3033
0.003
1
6mer
3196-3216
0.002
0
7mer
2503-2517
0.002
Not Conserved
XLOC_004271
hsa-miR-15a-5p
0.841
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010613
Biotype: transcript isomorph
Gene id: XLOC_004271
Gene Name: XLOC_004271
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3903-3918
0.036
0
6mer
2351-2376
0.002
1
XLOC_008895
hsa-miR-15a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018569
Biotype: transcript isomorph
Gene id: XLOC_008895
Gene Name: XLOC_008895
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1116-1134
0.020
3
7mer
188-207
0.010
1
6mer
1612-1622
0.005
4
6mer
595-613
0.003
3
RP11-285A1.1
hsa-miR-15a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566715
Biotype: lincRNA
Gene id: ENSG00000260988
Gene Name: RP11-285A1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1717-1743
0.038
1
CTD-3065J16.6
hsa-miR-15a-5p
0.840
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000561181
Biotype: antisense
Gene id: ENSG00000204791
Gene Name: CTD-3065J16.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
233-259
0.005
7
7mer
156-179
0.005
3
7mer
156-176
0.005
3
7mer
156-182
0.004
2
6mer
629-656
0.003
2
6mer
863-884
0.003
3
6mer
75-97
0.002
1
7mer
655-674
0.002
3
6mer
311-327
0.002
3
7mer
156-173
0.002
Not Conserved
6mer
680-695
0.002
4
6mer
646-671
0.002
3
6mer
149-170
0.001
Not Conserved
RP4-705D16.3
hsa-miR-15a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000425939
Biotype: antisense
Gene id: ENSG00000228809
Gene Name: RP4-705D16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-322
0.020
1
7mer
112-124
0.008
2
6mer
115-135
0.005
3
6mer
305-322
0.004
1
AC007952.5
hsa-miR-15a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000399091
Biotype: lincRNA
Gene id: ENSG00000228157
Gene Name: AC007952.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
149-170
0.019
2
8mer
170-196
0.019
1
AC079779.5
hsa-miR-15a-5p
0.839
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590678
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
65-90
0.038
1
AC079779.5
hsa-miR-15a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000457938
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
65-90
0.038
1
RP11-1055B8.8
hsa-miR-15a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572590
Biotype: antisense
Gene id: ENSG00000263271
Gene Name: RP11-1055B8.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
126-149
0.015
12
7mer
375-397
0.008
1
7mer
33-57
0.007
1
7mer
372-397
0.005
1
7mer
369-395
0.004
0
MALAT1
hsa-miR-15a-5p
0.838
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000620465
Biotype: lincRNA
Gene id: ENSG00000251562
Gene Name: MALAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-280
0.038
8
AC079779.5
hsa-miR-15a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000591158
Biotype: lincRNA
Gene id: ENSG00000235779
Gene Name: AC079779.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
63-88
0.038
1
LINC01517
hsa-miR-15a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000611112
Biotype: lincRNA
Gene id: ENSG00000232624
Gene Name: LINC01517
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
83-104
0.037
0
LINC00665
hsa-miR-15a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585356
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-336
0.037
1
LINC00665
hsa-miR-15a-5p
0.837
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590657
Biotype: lincRNA
Gene id: ENSG00000232677
Gene Name: LINC00665
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
319-336
0.037
1
CTD-3018O17.3
hsa-miR-15a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594119
Biotype: retained_intron
Gene id: ENSG00000269834
Gene Name: CTD-3018O17.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1164-1182
0.017
1
7mer
2332-2347
0.012
1
6mer
2447-2466
0.006
1
6mer
917-942
0.002
0
RP11-259P20.1
hsa-miR-15a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000420595
Biotype: antisense
Gene id: ENSG00000234117
Gene Name: RP11-259P20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-271
0.033
Not Conserved
6mer
29-51
0.004
1
AGAP2-AS1
hsa-miR-15a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000542466
Biotype: antisense
Gene id: ENSG00000255737
Gene Name: AGAP2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1070-1094
0.035
12
6mer
315-337
0.003
0
KIAA1875
hsa-miR-15a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_024207.1
Biotype: sense
Gene id: NR_024207.1 (gene)
Gene Name: KIAA1875
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2090-2117
0.006
9
6mer
106-122
0.004
2
8mer
1933-1952
0.003
1
6mer
4048-4063
0.003
9
6mer
444-459
0.003
3
6mer
5940-5957
0.002
1
7mer
1411-1437
0.002
3
6mer
220-239
0.002
3
6mer
635-657
0.002
1
7mer
644-659
0.002
1
6mer
806-820
0.002
2
6mer
4139-4163
0.001
6
6mer
3460-3484
0.001
2
6mer
6247-6268
0.001
0
6mer
4637-4664
0.001
2
6mer
1481-1500
0.001
4
RP11-1086F11.1
hsa-miR-15a-5p
0.836
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000417786
Biotype: sense_intronic
Gene id: ENSG00000225300
Gene Name: RP11-1086F11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
15-31
0.016
1
6mer
1482-1495
0.012
1
6mer
1807-1829
0.006
0
7mer
1566-1591
0.003
Not Conserved
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