Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p

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Filters
Gene
miRNA
Pr. score
Methods
RP5-991G20.1
hsa-miR-15a-5p
IP

Gene Details
Chromosome: 16
Transcript: ENST00000563328
Biotype: antisense
Gene id: ENSG00000259768
Gene Name: RP5-991G20.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment: arsenite
Location
Region
Method
Result
Validation Type
Source
16:72787569-72787597
exon
HITS-CLIP
DIRECT
LncBasev2
RP6-218J18.2
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: X
Transcript: ENST00000397254
Biotype: processed_pseudogene
Gene id: ENSG00000214019
Gene Name: RP6-218J18.2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:44030762-44030790
exon
HITS-CLIP
DIRECT
LncBasev2
RP6-24A23.7
hsa-miR-15a-5p
IP

Gene Details
Chromosome: X
Transcript: ENST00000564206
Biotype: sense_overlapping
Gene id: ENSG00000261409
Gene Name: RP6-24A23.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:108722324-108722352
exon
PAR-CLIP
DIRECT
LncBasev2
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: no treatment (control)
Location
Region
Method
Result
Validation Type
Source
X:108720279-108720307
exon
HITS-CLIP
DIRECT
LncBasev2
X:108722324-108722352
exon
HITS-CLIP
DIRECT
LncBasev2
X:108720279-108720307
exon
HITS-CLIP
DIRECT
LncBasev2
X:108720279-108720307
exon
HITS-CLIP
DIRECT
LncBasev2
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
X:108722324-108722352
exon
PAR-CLIP
DIRECT
LncBasev2
RPL14P1
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 12
Transcript: ENST00000484568
Biotype: processed_pseudogene
Gene id: ENSG00000139239
Gene Name: RPL14P1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:62965750-62965802
exon
HITS-CLIP
DIRECT
LncBasev2
Tested Cell Line: HEK293
Category: Embryonic/Fetal
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
12:62965762-62965793
exon
PAR-CLIP
DIRECT
LncBasev2
RPL24P2
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 20
Transcript: ENST00000421023
Biotype: processed_pseudogene
Gene id: ENSG00000235065
Gene Name: RPL24P2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:21115031-21115059
exon
HITS-CLIP
DIRECT
LncBasev2
RPL24P4
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 6
Transcript: ENST00000326586
Biotype: processed_pseudogene
Gene id: ENSG00000181524
Gene Name: RPL24P4
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Cervix
HELA
IP
Tested Cell Line: HELA
Category: Cancer/Malignant
Experimental Condition: Hela cells were treated with control shRNA.
Location
Region
Method
Result
Validation Type
Source
6:42956338-42956369
exon
HITS-CLIP
DIRECT
LncBasev2
RPL24P8
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 9
Transcript: ENST00000446071
Biotype: processed_pseudogene
Gene id: ENSG00000236801
Gene Name: RPL24P8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:70217503-70217531
exon
HITS-CLIP
DIRECT
LncBasev2
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
9:70217503-70217531
exon
HITS-CLIP
DIRECT
LncBasev2
RPL27AP
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 20
Transcript: ENST00000358609
Biotype: processed_pseudogene
Gene id: ENSG00000215467
Gene Name: RPL27AP
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:43653117-43653145
exon
HITS-CLIP
DIRECT
LncBasev2
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:43653096-43653145
exon
HITS-CLIP
DIRECT
LncBasev2
RPLP0P6
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 2
Transcript: ENST00000394878
Biotype: processed_pseudogene
Gene id: ENSG00000213553
Gene Name: RPLP0P6
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: HS5
Category: Normal/Primary
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:38482153-38482181
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482153-38482181
exon
HITS-CLIP
DIRECT
LncBasev2
Mammary Gland
MDAMB231
IP
Tested Cell Line: MDAMB231
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:38482153-38482181
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482153-38482181
exon
HITS-CLIP
DIRECT
LncBasev2
2:38482153-38482181
exon
HITS-CLIP
DIRECT
LncBasev2
Bone Marrow
BCBL1
IP
Tested Cell Line: BCBL1
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
2:38482153-38482181
exon
HITS-CLIP
DIRECT
LncBasev2
RPS19P3
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 14
Transcript: ENST00000480487
Biotype: processed_pseudogene
Gene id: ENSG00000240463
Gene Name: RPS19P3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
14:34568952-34568980
exon
HITS-CLIP
DIRECT
LncBasev2
RPS27AP2
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 20
Transcript: ENST00000457576
Biotype: processed_pseudogene
Gene id: ENSG00000232333
Gene Name: RPS27AP2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
20:17517046-17517074
exon
HITS-CLIP
DIRECT
LncBasev2
RPS27P12
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 3
Transcript: ENST00000464146
Biotype: processed_pseudogene
Gene id: ENSG00000241673
Gene Name: RPS27P12
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: 293S
Category: Embryonic/Fetal
Experimental Condition: treatment:hippuristanol
Location
Region
Method
Result
Validation Type
Source
3:129218166-129218194
exon
HITS-CLIP
DIRECT
LncBasev2
RPS28P7
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 11
Transcript: ENST00000473748
Biotype: processed_pseudogene
Gene id: ENSG00000227097
Gene Name: RPS28P7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Pancreas
Beta cells
IP
Tested Cell Line: Beta cells
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:82689752-82689780
exon
HITS-CLIP
DIRECT
LncBasev2
RPS2P46
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 17
Transcript: ENST00000458332
Biotype: processed_pseudogene
Gene id: ENSG00000189343
Gene Name: RPS2P46
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:19446464-19446492
exon
HITS-CLIP
DIRECT
LncBasev2
Mammary Gland
MCF7
IP
Tested Cell Line: MCF7
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:19446464-19446492
exon
HITS-CLIP
DIRECT
LncBasev2
RPSAP42
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 6
Transcript: ENST00000403415
Biotype: processed_pseudogene
Gene id: ENSG00000219463
Gene Name: RPSAP42
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Mammary Gland
BT474
IP
Tested Cell Line: BT474
Category: Cancer/Malignant
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
6:137995510-137995538
exon
HITS-CLIP
DIRECT
LncBasev2
SBF2-AS1
hsa-miR-15a-5p
IP

Gene Details
Chromosome: 11
Transcript: ENST00000498905
Biotype: antisense
Gene id: ENSG00000246273
Gene Name: SBF2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:9808748-9808776
exon
HITS-CLIP
DIRECT
LncBasev2
SBF2-AS1
hsa-miR-15a-5p
IP

Gene Details
Chromosome: 11
Transcript: NR_036485.1
Biotype: antisense
Gene id: NR_036485.1 (gene)
Gene Name: SBF2-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
11:9808748-9808776
exon
HITS-CLIP
DIRECT
LncBasev2
SCAND2P
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 15
Transcript: ENST00000348993
Biotype: processed_transcript
Gene id: ENSG00000176700
Gene Name: SCAND2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
15:84639855-84639883
exon
HITS-CLIP
DIRECT
LncBasev2
SDHAP2
hsa-miR-15a-5p
-
IP

Gene Details
Chromosome: 3
Transcript: ENST00000455183
Biotype: transcribed_unprocessed_pseudogene
Gene id: ENSG00000215837
Gene Name: SDHAP2
UCSC graphic:
Expression: -

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
3:195664173-195664201
exon
HITS-CLIP
DIRECT
LncBasev2
SENP3-EIF4A1
hsa-miR-15a-5p
IP

Gene Details
Chromosome: 17
Transcript: NR_037926.1
Biotype: sense
Gene id: NR_037926.1 (gene)
Gene Name: SENP3-EIF4A1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary

miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Publication
Tissue
Cell Type
Methods
Tested Cell Line: -
Category: -
Experimental Condition: -
Location
Region
Method
Result
Validation Type
Source
17:7563459-7563487
exon
HITS-CLIP
DIRECT
LncBasev2
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