LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
SNHG1
hsa-miR-15a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000535689
Biotype: retained_intron
Gene id: ENSG00000255717
Gene Name: SNHG1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-183
0.027
1
7mer
42-67
0.014
0
XLOC_011396
hsa-miR-15a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023572
Biotype: transcript isomorph
Gene id: XLOC_011396
Gene Name: XLOC_011396
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
91-114
0.041
0
SAP30L-AS1
hsa-miR-15a-5p
0.868
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519727
Biotype: antisense
Gene id: ENSG00000245275
Gene Name: SAP30L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
59-79
0.041
Not Conserved
CTD-2332E11.2
hsa-miR-15a-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598116
Biotype: lincRNA
Gene id: ENSG00000268560
Gene Name: CTD-2332E11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
405-422
0.029
0
6mer
399-419
0.013
0
PAPPA-AS1
hsa-miR-15a-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000445861
Biotype: antisense
Gene id: ENSG00000256040
Gene Name: PAPPA-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1439-1459
0.040
4
6mer
1383-1398
0.001
3
RP11-184M15.1
hsa-miR-15a-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514265
Biotype: lincRNA
Gene id: ENSG00000248187
Gene Name: RP11-184M15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-849
0.041
4
LINC00700
hsa-miR-15a-5p
0.867
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000454424
Biotype: lincRNA
Gene id: ENSG00000234962
Gene Name: LINC00700
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
46-61
0.038
1
6mer
63-80
0.004
1
RP11-131K5.2
hsa-miR-15a-5p
0.866
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580134
Biotype: lincRNA
Gene id: ENSG00000265494
Gene Name: RP11-131K5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1860-1885
0.034
1
6mer
1025-1050
0.007
1
XLOC_013274
hsa-miR-15a-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1104-1116
0.041
1
XLOC_008323
hsa-miR-15a-5p
0.865
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017647
Biotype: transcript isomorph
Gene id: XLOC_008323
Gene Name: XLOC_008323
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
334-354
0.041
0
AC011747.3
hsa-miR-15a-5p
0.864
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418358
Biotype: lincRNA
Gene id: ENSG00000231435
Gene Name: AC011747.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
255-273
0.027
9
6mer
890-904
0.008
9
6mer
1002-1018
0.004
1
6mer
198-208
0.003
1
LINC00636
hsa-miR-15a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000494231
Biotype: lincRNA
Gene id: ENSG00000240423
Gene Name: LINC00636
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1212-1231
0.038
3
6mer
372-391
0.002
1
XLOC_011569
hsa-miR-15a-5p
0.862
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023252
Biotype: transcript isomorph
Gene id: XLOC_011569
Gene Name: XLOC_011569
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7-27
0.031
0
6mer
2283-2305
0.007
5
6mer
2640-2656
0.003
0
RP11-572O6.1
hsa-miR-15a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607025
Biotype: lincRNA
Gene id: ENSG00000271973
Gene Name: RP11-572O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
99-120
0.029
2
7mer
32-58
0.011
0
RP11-25E2.1
hsa-miR-15a-5p
0.861
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548488
Biotype: lincRNA
Gene id: ENSG00000257958
Gene Name: RP11-25E2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-429
0.019
1
7mer
911-928
0.016
1
6mer
352-371
0.004
1
6mer
435-447
0.002
0
RP11-642D21.2
hsa-miR-15a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520588
Biotype: antisense
Gene id: ENSG00000253420
Gene Name: RP11-642D21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-201
0.030
0
6mer
213-234
0.011
9
RP4-761J14.9
hsa-miR-15a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000602759
Biotype: antisense
Gene id: ENSG00000270068
Gene Name: RP4-761J14.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
377-402
0.040
2
RP11-268P4.5
hsa-miR-15a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000508615
Biotype: lincRNA
Gene id: ENSG00000250166
Gene Name: RP11-268P4.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
70-95
0.022
2
6mer
350-365
0.008
1
6mer
189-206
0.006
1
6mer
70-93
0.005
0
LINC00475
hsa-miR-15a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444476
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
67-76
0.015
0
6mer
23-47
0.014
0
6mer
134-152
0.011
0
AC022007.5
hsa-miR-15a-5p
0.860
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000420091
Biotype: lincRNA
Gene id: ENSG00000206567
Gene Name: AC022007.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1170-1193
0.020
0
6mer
1234-1250
0.010
0
6mer
1173-1193
0.010
0
6mer
866-886
0.001
Not Conserved
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