LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
RP11-680F8.1
hsa-miR-15a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000536835
Biotype: antisense
Gene id: ENSG00000256802
Gene Name: RP11-680F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
547-563
0.038
1
6mer
275-296
0.003
1
6mer
400-418
0.002
0
LINC00384
hsa-miR-15a-5p
0.878
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437721
Biotype: lincRNA
Gene id: ENSG00000232117
Gene Name: LINC00384
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16-33
0.029
0
7mer
762-778
0.005
0
6mer
222-245
0.004
1
7mer
4325-4350
0.004
0
6mer
5637-5654
0.002
1
XLOC_014147
hsa-miR-15a-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029754
Biotype: transcript isomorph
Gene id: XLOC_014147
Gene Name: XLOC_014147
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
793-818
0.013
0
6mer
540-561
0.011
0
6mer
561-583
0.011
0
6mer
74-96
0.005
Not Conserved
6mer
182-202
0.003
Not Conserved
LINC00355
hsa-miR-15a-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456627
Biotype: lincRNA
Gene id: ENSG00000227674
Gene Name: LINC00355
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
491-506
0.037
0
6mer
1794-1819
0.004
0
6mer
1114-1131
0.002
0
TCEAL3-AS1
hsa-miR-15a-5p
0.877
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000424887
Biotype: antisense
Gene id: ENSG00000224031
Gene Name: TCEAL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
18-37
0.043
0
P4HA2-AS1
hsa-miR-15a-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_047470.1
Biotype: antisense
Gene id: NR_047470.1 (gene)
Gene Name: P4HA2-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
515-539
0.043
0
PCAT19
hsa-miR-15a-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3422-3438
0.019
1
7mer
2478-2493
0.008
0
6mer
486-512
0.007
0
6mer
2330-2346
0.006
1
6mer
1783-1800
0.003
0
XLOC_008329
hsa-miR-15a-5p
0.876
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017592
Biotype: transcript isomorph
Gene id: XLOC_008329
Gene Name: XLOC_008329
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-272
0.043
0
C1RL-AS1
hsa-miR-15a-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541775
Biotype: antisense
Gene id: ENSG00000205885
Gene Name: C1RL-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-44
0.010
0
8mer
411-433
0.008
1
7mer
423-445
0.003
1
7mer
411-436
0.003
1
7mer
423-442
0.003
1
7mer
418-439
0.003
1
6mer
69-95
0.003
2
7mer
423-448
0.003
0
6mer
881-900
0.002
1
7mer
2495-2508
0.002
1
6mer
1824-1838
0.001
0
TMEM108-AS1
hsa-miR-15a-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000504993
Biotype: antisense
Gene id: ENSG00000251011
Gene Name: TMEM108-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
551-576
0.042
5
SPECC1L-ADORA2A
hsa-miR-15a-5p
0.875
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_103546.1
Biotype: sense
Gene id: NR_103546.1 (gene)
Gene Name: SPECC1L-ADORA2A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5938-5963
0.018
5
7mer
4738-4753
0.006
9
6mer
53-66
0.005
3
6mer
5925-5939
0.003
4
6mer
5831-5848
0.003
4
7mer
3926-3948
0.002
1
6mer
764-785
0.002
2
6mer
828-847
0.002
7
RP11-789F5.1
hsa-miR-15a-5p
0.874
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000479244
Biotype: lincRNA
Gene id: ENSG00000239767
Gene Name: RP11-789F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-44
0.022
3
7mer
27-44
0.020
2
RP11-1197K16.2
hsa-miR-15a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573207
Biotype: antisense
Gene id: ENSG00000262339
Gene Name: RP11-1197K16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
272-293
0.042
0
RP11-250B2.3
hsa-miR-15a-5p
0.873
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000452402
Biotype: lincRNA
Gene id: ENSG00000233967
Gene Name: RP11-250B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
485-510
0.036
1
8mer
510-532
0.006
0
RP11-679B19.1
hsa-miR-15a-5p
0.872
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000622621
Biotype: antisense
Gene id: ENSG00000277954
Gene Name: RP11-679B19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
124-142
0.041
0
6mer
1841-1852
0.001
Not Conserved
FAM66C
hsa-miR-15a-5p
0.871
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541558
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1194-1213
0.038
1
6mer
1003-1026
0.004
0
AC007098.1
hsa-miR-15a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452397
Biotype: antisense
Gene id: ENSG00000226605
Gene Name: AC007098.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
60-84
0.042
4
AL022344.5
hsa-miR-15a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000439913
Biotype: lincRNA
Gene id: ENSG00000234864
Gene Name: AL022344.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18-34
0.023
0
8mer
352-371
0.017
0
6mer
2108-2134
0.002
0
XLOC_011448
hsa-miR-15a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023648
Biotype: transcript isomorph
Gene id: XLOC_011448
Gene Name: XLOC_011448
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
10312-10335
0.035
8
7mer
7940-7959
0.006
5
6mer
8371-8397
0.001
1
RP11-121C6.5
hsa-miR-15a-5p
0.869
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000610448
Biotype: lincRNA
Gene id: ENSG00000276272
Gene Name: RP11-121C6.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
213-233
0.025
2
7mer
426-443
0.007
1
6mer
160-185
0.004
0
6mer
903-927
0.003
0
6mer
554-576
0.003
0
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