LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-15a-5p


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Gene
miRNA
Score
DIANA Links
XLOC_009038
hsa-miR-15a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019202
Biotype: transcript isomorph
Gene id: XLOC_009038
Gene Name: XLOC_009038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
416-437
0.035
1
6mer
661-682
0.005
1
6mer
606-623
0.004
Not Conserved
RP11-343L5.2
hsa-miR-15a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607625
Biotype: lincRNA
Gene id: ENSG00000271862
Gene Name: RP11-343L5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
475-494
0.044
2
DCTN1-AS1
hsa-miR-15a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000437991
Biotype: antisense
Gene id: ENSG00000237737
Gene Name: DCTN1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-535
0.025
2
7mer
72-95
0.011
1
6mer
441-467
0.004
1
6mer
1612-1626
0.004
1
DCTN1-AS1
hsa-miR-15a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_024463.1
Biotype: antisense
Gene id: NR_024463.1 (gene)
Gene Name: DCTN1-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-535
0.025
2
7mer
72-95
0.011
1
6mer
441-467
0.004
1
6mer
1612-1626
0.004
1
RP11-486O12.2
hsa-miR-15a-5p
0.886
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000498967
Biotype: lincRNA
Gene id: ENSG00000247373
Gene Name: RP11-486O12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
776-802
0.042
0
7mer
6876-6892
0.003
0
RP11-739G5.1
hsa-miR-15a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000554318
Biotype: lincRNA
Gene id: ENSG00000258631
Gene Name: RP11-739G5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
321-345
0.044
2
XLOC_010237
hsa-miR-15a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020967
Biotype: transcript isomorph
Gene id: XLOC_010237
Gene Name: XLOC_010237
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7-27
0.044
1
RP11-1197K16.2
hsa-miR-15a-5p
0.885
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000576197
Biotype: antisense
Gene id: ENSG00000262339
Gene Name: RP11-1197K16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
289-310
0.044
0
XLOC_004072
hsa-miR-15a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007434
Biotype: transcript isomorph
Gene id: XLOC_004072
Gene Name: XLOC_004072
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-849
0.044
4
XLOC_009126
hsa-miR-15a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019299
Biotype: transcript isomorph
Gene id: XLOC_009126
Gene Name: XLOC_009126
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
194-213
0.044
1
XLOC_006933
hsa-miR-15a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014864
Biotype: transcript isomorph
Gene id: XLOC_006933
Gene Name: XLOC_006933
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3300-3323
0.017
0
7mer
325-350
0.009
0
7mer
359-374
0.006
1
7mer
920-934
0.005
1
8mer
809-833
0.004
0
6mer
1962-1981
0.002
2
RP3-446N13.1
hsa-miR-15a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_110053.1
Biotype: lincRNA
Gene id: NR_110053.1 (gene)
Gene Name: RP3-446N13.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-505
0.044
1
RP11-539I5.1
hsa-miR-15a-5p
0.884
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000453491
Biotype: antisense
Gene id: ENSG00000225302
Gene Name: RP11-539I5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4822-4839
0.025
8
7mer
620-643
0.010
1
7mer
3302-3325
0.003
0
8mer
2175-2192
0.003
0
6mer
1112-1133
0.001
1
6mer
2169-2192
0.001
0
STAG3L5P-PVRIG2P-PILRB
hsa-miR-15a-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036569.1
Biotype: sense
Gene id: NR_036569.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3658-3679
0.018
0
7mer
792-810
0.014
1
8mer
1102-1124
0.005
2
6mer
987-1004
0.003
1
7mer
2545-2565
0.002
2
7mer
2552-2576
0.001
1
6mer
1599-1616
0.001
1
6mer
1635-1654
0.000
0
XLOC_002010
hsa-miR-15a-5p
0.883
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004165
Biotype: transcript isomorph
Gene id: XLOC_002010
Gene Name: XLOC_002010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2980-2999
0.017
2
7mer
157-181
0.010
0
7mer
28-47
0.005
1
6mer
418-441
0.004
2
6mer
30-47
0.003
1
6mer
947-961
0.002
0
6mer
2007-2033
0.001
0
6mer
1947-1963
0.001
0
LINC00641
hsa-miR-15a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555379
Biotype: retained_intron
Gene id: ENSG00000258441
Gene Name: LINC00641
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
207-228
0.032
3
6mer
98-118
0.005
2
7mer
3429-3453
0.005
0
6mer
2557-2577
0.001
Not Conserved
RP11-110G21.1
hsa-miR-15a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000423716
Biotype: antisense
Gene id: ENSG00000228801
Gene Name: RP11-110G21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
876-901
0.030
0
7mer
563-587
0.011
0
6mer
644-662
0.002
0
P4HA2-AS1
hsa-miR-15a-5p
0.881
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000417667
Biotype: antisense
Gene id: ENSG00000237714
Gene Name: P4HA2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
515-539
0.043
0
STAG3L5P-PVRIG2P-PILRB
hsa-miR-15a-5p
0.880
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_036570.1
Biotype: sense
Gene id: NR_036570.1 (gene)
Gene Name: STAG3L5P-PVRIG2P-PILRB
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2982-3003
0.018
0
7mer
860-878
0.012
1
8mer
1071-1093
0.005
2
7mer
2078-2098
0.003
2
6mer
956-973
0.002
1
7mer
2085-2109
0.002
1
6mer
1661-1678
0.001
1
6mer
1697-1716
0.001
0
XLOC_001508
hsa-miR-15a-5p
0.879
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003719
Biotype: transcript isomorph
Gene id: XLOC_001508
Gene Name: XLOC_001508
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-15a-5p
Sequence: uagcagcacauaaugguuugug
MirBase ID: MIMAT0000068
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3524-3541
0.013
5
7mer
3563-3584
0.012
6
6mer
3540-3561
0.012
9
6mer
3178-3196
0.004
2
6mer
2586-2607
0.002
3
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