LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
FAM87B
hsa-miR-155-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000326734
Biotype: lincRNA
Gene id: ENSG00000177757
Gene Name: FAM87B
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1055-1079
0.014
0
6mer
1885-1907
0.008
0
6mer
312-334
0.003
0
AC002117.1
hsa-miR-155-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000589950
Biotype: antisense
Gene id: ENSG00000224505
Gene Name: AC002117.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
140-162
0.009
7
6mer
112-130
0.009
7
6mer
375-383
0.006
2
XLOC_010797
hsa-miR-155-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022468
Biotype: transcript isomorph
Gene id: XLOC_010797
Gene Name: XLOC_010797
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
908-930
0.016
7
6mer
805-822
0.009
9
MIR17HG
hsa-miR-155-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000581816
Biotype: lincRNA
Gene id: ENSG00000215417
Gene Name: MIR17HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-616
0.021
9
6mer
1038-1051
0.004
8
LINC00942
hsa-miR-155-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000515614
Biotype: lincRNA
Gene id: ENSG00000249628
Gene Name: LINC00942
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
666-692
0.022
5
6mer
1903-1922
0.002
Not Conserved
RP11-314B1.2
hsa-miR-155-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000609089
Biotype: lincRNA
Gene id: ENSG00000273301
Gene Name: RP11-314B1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4849-4875
0.020
8
6mer
4105-4127
0.003
1
6mer
2432-2451
0.002
2
CTA-342B11.3
hsa-miR-155-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624235
Biotype: lincRNA
Gene id: ENSG00000280370
Gene Name: CTA-342B11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
533-557
0.006
1
8mer
1120-1145
0.005
0
6mer
23291-23295
0.002
Not Conserved
6mer
6358-6379
0.002
3
6mer
11299-11322
0.002
0
6mer
1243-1265
0.002
0
6mer
1101-1127
0.002
0
6mer
11800-11825
0.001
1
6mer
12915-12928
0.001
1
6mer
8686-8700
0.001
0
XLOC_005164
hsa-miR-155-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011688
Biotype: transcript isomorph
Gene id: XLOC_005164
Gene Name: XLOC_005164
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2192-2205
0.012
1
7mer
1682-1707
0.006
1
6mer
3034-3042
0.006
9
FAM66B
hsa-miR-155-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606573
Biotype: lincRNA
Gene id: ENSG00000215374
Gene Name: FAM66B
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-131
0.025
1
XLOC_011170
hsa-miR-155-5p
0.701
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023301
Biotype: transcript isomorph
Gene id: XLOC_011170
Gene Name: XLOC_011170
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
244-270
0.022
1
6mer
709-735
0.003
Not Conserved
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