LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
RP11-279F6.1
hsa-miR-155-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559477
Biotype: lincRNA
Gene id: ENSG00000245750
Gene Name: RP11-279F6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
791-816
0.015
1
6mer
925-943
0.005
2
6mer
210-232
0.005
1
AC002456.2
hsa-miR-155-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000415965
Biotype: antisense
Gene id: ENSG00000223969
Gene Name: AC002456.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
118-139
0.025
3
CTD-2128A3.3
hsa-miR-155-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554753
Biotype: lincRNA
Gene id: ENSG00000258814
Gene Name: CTD-2128A3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
100-119
0.020
3
6mer
265-283
0.005
3
RP4-663N10.1
hsa-miR-155-5p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425449
Biotype: antisense
Gene id: ENSG00000228035
Gene Name: RP4-663N10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
640-653
0.025
1
HLCS-IT1
hsa-miR-155-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000434195
Biotype: sense_intronic
Gene id: ENSG00000237646
Gene Name: HLCS-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15-39
0.025
6
RP11-881L2.1
hsa-miR-155-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584109
Biotype: antisense
Gene id: ENSG00000266541
Gene Name: RP11-881L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
505-524
0.025
0
CTC-428H11.2
hsa-miR-155-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607486
Biotype: antisense
Gene id: ENSG00000272367
Gene Name: CTC-428H11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
584-601
0.020
2
6mer
26-53
0.005
2
RP3-412A9.17
hsa-miR-155-5p
0.706
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3840-3850
0.007
4
7mer
5371-5384
0.006
3
6mer
16366-16382
0.005
0
6mer
7540-7564
0.002
0
6mer
7884-7909
0.002
1
6mer
9165-9190
0.001
0
6mer
5428-5442
0.001
1
RP11-416I2.1
hsa-miR-155-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562897
Biotype: lincRNA
Gene id: ENSG00000260328
Gene Name: RP11-416I2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
409-428
0.025
1
LINC00260
hsa-miR-155-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_046213.1
Biotype: sense
Gene id: NR_046213.1 (gene)
Gene Name: LINC00260
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-219
0.015
0
7mer
813-840
0.010
1
XLOC_000026
hsa-miR-155-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001923
Biotype: transcript isomorph
Gene id: XLOC_000026
Gene Name: XLOC_000026
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
838-865
0.025
1
XLOC_005302
hsa-miR-155-5p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011819
Biotype: transcript isomorph
Gene id: XLOC_005302
Gene Name: XLOC_005302
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3082-3104
0.009
6
6mer
4478-4500
0.008
8
6mer
4398-4416
0.008
5
AC011294.3
hsa-miR-155-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000469937
Biotype: lincRNA
Gene id: ENSG00000233539
Gene Name: AC011294.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
725-741
0.022
2
6mer
587-610
0.003
Not Conserved
XLOC_007107
hsa-miR-155-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015444
Biotype: transcript isomorph
Gene id: XLOC_007107
Gene Name: XLOC_007107
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
230-257
0.025
6
AC011995.1
hsa-miR-155-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000452701
Biotype: lincRNA
Gene id: ENSG00000237720
Gene Name: AC011995.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-487
0.025
1
RP11-401P9.5
hsa-miR-155-5p
0.704
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570167
Biotype: antisense
Gene id: ENSG00000260249
Gene Name: RP11-401P9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
101-105
0.008
3
6mer
304-324
0.006
1
6mer
316-343
0.006
3
6mer
5136-5160
0.005
1
AP005530.1
hsa-miR-155-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000575820
Biotype: lincRNA
Gene id: ENSG00000262352
Gene Name: AP005530.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
88-106
0.025
Not Conserved
LHFPL3-AS1
hsa-miR-155-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000417290
Biotype: antisense
Gene id: ENSG00000226869
Gene Name: LHFPL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
451-469
0.019
5
6mer
747-770
0.006
1
RP11-946L16.2
hsa-miR-155-5p
0.703
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621300
Biotype: antisense
Gene id: ENSG00000275278
Gene Name: RP11-946L16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
210-237
0.025
2
FAM87B
hsa-miR-155-5p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_103536.1
Biotype: lincRNA
Gene id: NR_103536.1 (gene)
Gene Name: FAM87B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1055-1079
0.014
0
6mer
1885-1907
0.008
0
6mer
312-334
0.003
0
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