LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
LINC00907
hsa-miR-155-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: NR_046455.1
Biotype: lincRNA
Gene id: NR_046455.1 (gene)
Gene Name: LINC00907
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1619-1644
0.016
1
7mer
1277-1299
0.009
1
6mer
1291-1310
0.001
0
LOC646719
hsa-miR-155-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_046262.1
Biotype: lincRNA
Gene id: NR_046262.1 (gene)
Gene Name: LOC646719
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3101-3121
0.015
1
6mer
522-545
0.004
1
6mer
1413-1430
0.003
6
6mer
2883-2908
0.002
2
6mer
2820-2842
0.001
1
RP3-461P17.10
hsa-miR-155-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000595203
Biotype: lincRNA
Gene id: ENSG00000269549
Gene Name: RP3-461P17.10
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
965-988
0.025
1
RP11-279O17.1
hsa-miR-155-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566208
Biotype: lincRNA
Gene id: ENSG00000261319
Gene Name: RP11-279O17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
525-549
0.025
1
LINC00907
hsa-miR-155-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585627
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1621-1646
0.016
1
7mer
1279-1301
0.009
1
6mer
1293-1312
0.001
0
XLOC_002806
hsa-miR-155-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006965
Biotype: transcript isomorph
Gene id: XLOC_002806
Gene Name: XLOC_002806
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
283-307
0.025
1
SNHG5
hsa-miR-155-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000369605
Biotype: lincRNA
Gene id: ENSG00000203875
Gene Name: SNHG5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-61
0.025
0
AC002456.2
hsa-miR-155-5p
0.711
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441971
Biotype: antisense
Gene id: ENSG00000223969
Gene Name: AC002456.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
114-135
0.025
3
TCEB3-AS1
hsa-miR-155-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427796
Biotype: antisense
Gene id: ENSG00000236810
Gene Name: TCEB3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
213-233
0.025
1
RP11-168O16.1
hsa-miR-155-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000458003
Biotype: antisense
Gene id: ENSG00000229191
Gene Name: RP11-168O16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3409-3425
0.013
Not Conserved
8mer
1419-1430
0.012
1
XLOC_003700
hsa-miR-155-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007404
Biotype: transcript isomorph
Gene id: XLOC_003700
Gene Name: XLOC_003700
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1010-1031
0.017
6
6mer
1173-1190
0.008
6
XLOC_013669
hsa-miR-155-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027881
Biotype: transcript isomorph
Gene id: XLOC_013669
Gene Name: XLOC_013669
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2019-2039
0.025
1
RP11-67H2.1
hsa-miR-155-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521500
Biotype: lincRNA
Gene id: ENSG00000253207
Gene Name: RP11-67H2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
684-710
0.025
0
XLOC_007775
hsa-miR-155-5p
0.710
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015846
Biotype: transcript isomorph
Gene id: XLOC_007775
Gene Name: XLOC_007775
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24-40
0.013
0
7mer
846-872
0.013
1
AC004125.3
hsa-miR-155-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567624
Biotype: lincRNA
Gene id: ENSG00000260264
Gene Name: AC004125.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
294-314
0.020
1
6mer
102-113
0.005
1
RP11-1081M5.2
hsa-miR-155-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000566892
Biotype: lincRNA
Gene id: ENSG00000260484
Gene Name: RP11-1081M5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
945-964
0.014
1
6mer
1674-1688
0.007
3
6mer
1263-1280
0.004
2
RP11-785F11.1
hsa-miR-155-5p
0.709
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509798
Biotype: lincRNA
Gene id: ENSG00000250341
Gene Name: RP11-785F11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1010-1031
0.017
6
6mer
1173-1190
0.008
6
RP11-1143G9.5
hsa-miR-155-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613291
Biotype: lincRNA
Gene id: ENSG00000274979
Gene Name: RP11-1143G9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2200-2216
0.011
1
7mer
4754-4778
0.006
0
6mer
4667-4673
0.004
0
6mer
2594-2610
0.003
1
6mer
3187-3211
0.002
0
RP11-144A16.8
hsa-miR-155-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000614608
Biotype: lincRNA
Gene id: ENSG00000276422
Gene Name: RP11-144A16.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
103-124
0.019
0
6mer
458-474
0.006
0
NDUFV2-AS1
hsa-miR-155-5p
0.708
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000608008
Biotype: antisense
Gene id: ENSG00000266053
Gene Name: NDUFV2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-31
0.025
4
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