LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
LINC00525
hsa-miR-155-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412730
Biotype: antisense
Gene id: ENSG00000146666
Gene Name: LINC00525
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1058-1079
0.026
0
XLOC_010885
hsa-miR-155-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022566
Biotype: transcript isomorph
Gene id: XLOC_010885
Gene Name: XLOC_010885
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
759-782
0.018
0
6mer
1090-1110
0.007
1
HCG18
hsa-miR-155-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449544
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3095-3110
0.012
1
6mer
339-354
0.005
2
6mer
563-579
0.004
1
6mer
4035-4053
0.002
0
6mer
2025-2041
0.002
1
RP11-159D23.2
hsa-miR-155-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000550309
Biotype: lincRNA
Gene id: ENSG00000257472
Gene Name: RP11-159D23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
40-66
0.017
0
6mer
275-289
0.005
2
6mer
1168-1190
0.004
3
RP11-686G23.2
hsa-miR-155-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526840
Biotype: lincRNA
Gene id: ENSG00000255178
Gene Name: RP11-686G23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1047-1071
0.026
2
RP11-727A23.11
hsa-miR-155-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000602322
Biotype: lincRNA
Gene id: ENSG00000269939
Gene Name: RP11-727A23.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-136
0.026
7
XLOC_003831
hsa-miR-155-5p
0.716
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008377
Biotype: transcript isomorph
Gene id: XLOC_003831
Gene Name: XLOC_003831
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-160
0.026
1
RP1-151F17.2
hsa-miR-155-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606924
Biotype: lincRNA
Gene id: ENSG00000272341
Gene Name: RP1-151F17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2106-2133
0.023
0
6mer
1480-1499
0.003
0
RP11-115D19.2
hsa-miR-155-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000620420
Biotype: antisense
Gene id: ENSG00000276542
Gene Name: RP11-115D19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
114-141
0.019
1
6mer
833-854
0.007
1
RP11-53B2.6
hsa-miR-155-5p
0.715
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000610087
Biotype: sense_intronic
Gene id: ENSG00000272746
Gene Name: RP11-53B2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
476-499
0.026
1
AC002456.2
hsa-miR-155-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412669
Biotype: antisense
Gene id: ENSG00000223969
Gene Name: AC002456.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
114-135
0.026
3
RP11-456O19.2
hsa-miR-155-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000588139
Biotype: lincRNA
Gene id: ENSG00000267057
Gene Name: RP11-456O19.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
118-133
0.026
1
RP11-201A3.1
hsa-miR-155-5p
0.714
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000569873
Biotype: lincRNA
Gene id: ENSG00000261182
Gene Name: RP11-201A3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1656-1678
0.018
6
6mer
1327-1340
0.006
7
6mer
1683-1696
0.002
0
AC009228.1
hsa-miR-155-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000413989
Biotype: antisense
Gene id: ENSG00000242628
Gene Name: AC009228.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-212
0.026
0
LINC00928
hsa-miR-155-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_027076.1
Biotype: lincRNA
Gene id: NR_027076.1 (gene)
Gene Name: LINC00928
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
21-42
0.026
1
CTD-2378E12.1
hsa-miR-155-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000613161
Biotype: lincRNA
Gene id: ENSG00000273674
Gene Name: CTD-2378E12.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
196-214
0.026
1
AC005740.6
hsa-miR-155-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000607378
Biotype: antisense
Gene id: ENSG00000271871
Gene Name: AC005740.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
244-260
0.026
0
LINC00472
hsa-miR-155-5p
0.713
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000426635
Biotype: lincRNA
Gene id: ENSG00000233237
Gene Name: LINC00472
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1794-1816
0.016
0
8mer
608-631
0.010
1
XLOC_009515
hsa-miR-155-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019718
Biotype: transcript isomorph
Gene id: XLOC_009515
Gene Name: XLOC_009515
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
725-749
0.026
2
RP1-118J21.5
hsa-miR-155-5p
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000418255
Biotype: antisense
Gene id: ENSG00000236546
Gene Name: RP1-118J21.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
714-739
0.013
9
6mer
732-751
0.013
10
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