LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
RP4-671O14.6
hsa-miR-155-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13347-13371
0.018
3
6mer
538-553
0.003
Not Conserved
6mer
11913-11933
0.001
1
6mer
6605-6626
0.001
1
6mer
10265-10281
0.001
Not Conserved
6mer
9122-9140
0.001
0
RP11-506M13.3
hsa-miR-155-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000482985
Biotype: lincRNA
Gene id: ENSG00000244733
Gene Name: RP11-506M13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1729-1753
0.017
0
6mer
1010-1036
0.003
0
6mer
648-672
0.003
1
6mer
254-280
0.003
Not Conserved
LINC00907
hsa-miR-155-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591381
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1262-1284
0.026
1
STXBP5-AS1
hsa-miR-155-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000443712
Biotype: antisense
Gene id: ENSG00000233452
Gene Name: STXBP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
391-399
0.026
4
XLOC_001809
hsa-miR-155-5p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003987
Biotype: transcript isomorph
Gene id: XLOC_001809
Gene Name: XLOC_001809
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
768-784
0.026
0
XXyac-YX155B6.5
hsa-miR-155-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000594699
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-86
0.021
2
6mer
432-457
0.005
1
KANSL1-AS1
hsa-miR-155-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000572634
Biotype: antisense
Gene id: ENSG00000214401
Gene Name: KANSL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
506-523
0.026
1
RP11-356O9.1
hsa-miR-155-5p
0.721
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554829
Biotype: lincRNA
Gene id: ENSG00000258414
Gene Name: RP11-356O9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
135-161
0.021
6
6mer
129-146
0.005
1
PROX1-AS1
hsa-miR-155-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608399
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
853-879
0.021
2
6mer
638-650
0.005
1
ALMS1-IT1
hsa-miR-155-5p
0.720
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000441587
Biotype: sense_intronic
Gene id: ENSG00000230002
Gene Name: ALMS1-IT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
317-338
0.026
1
LHFPL3-AS1
hsa-miR-155-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000411448
Biotype: antisense
Gene id: ENSG00000226869
Gene Name: LHFPL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
355-373
0.020
5
6mer
651-674
0.006
1
XLOC_011573
hsa-miR-155-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023205
Biotype: transcript isomorph
Gene id: XLOC_011573
Gene Name: XLOC_011573
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-41
0.026
1
TTN-AS1
hsa-miR-155-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590773
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-339
0.014
6
7mer
145-166
0.012
0
RP11-362K14.6
hsa-miR-155-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602835
Biotype: antisense
Gene id: ENSG00000270096
Gene Name: RP11-362K14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
712-732
0.019
2
6mer
1021-1041
0.007
3
LHFPL3-AS1
hsa-miR-155-5p
0.719
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000434579
Biotype: antisense
Gene id: ENSG00000226869
Gene Name: LHFPL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
512-530
0.020
5
6mer
808-831
0.006
1
RP11-475O6.1
hsa-miR-155-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457273
Biotype: lincRNA
Gene id: ENSG00000233008
Gene Name: RP11-475O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1088-1107
0.026
2
RP11-282K24.3
hsa-miR-155-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000501211
Biotype: sense_intronic
Gene id: ENSG00000253284
Gene Name: RP11-282K24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4915-4932
0.018
0
7mer
4058-4075
0.003
1
6mer
2420-2443
0.002
2
6mer
4000-4023
0.001
Not Conserved
6mer
4078-4101
0.001
1
XLOC_006507
hsa-miR-155-5p
0.718
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013201
Biotype: transcript isomorph
Gene id: XLOC_006507
Gene Name: XLOC_006507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6404-6425
0.006
2
6mer
8295-8319
0.005
0
7mer
3723-3743
0.005
2
7mer
3642-3663
0.003
2
6mer
1110-1123
0.003
2
6mer
884-905
0.002
Not Conserved
6mer
4668-4692
0.001
0
RP6-27P15.2
hsa-miR-155-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000411940
Biotype: antisense
Gene id: ENSG00000232183
Gene Name: RP6-27P15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
127-141
0.026
1
NRON
hsa-miR-155-5p
0.717
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_045006.1
Biotype: antisense
Gene id: NR_045006.1 (gene)
Gene Name: NRON
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
251-260
0.024
7
6mer
1357-1378
0.002
0
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