LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
XXyac-YX155B6.5
hsa-miR-155-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000595367
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-86
0.023
2
6mer
469-488
0.004
1
HOXA-AS2
hsa-miR-155-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000593438
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
439-455
0.027
0
RP11-368I23.3
hsa-miR-155-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000609121
Biotype: lincRNA
Gene id: ENSG00000272797
Gene Name: RP11-368I23.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
413-440
0.027
3
PROX1-AS1
hsa-miR-155-5p
0.732
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608138
Biotype: antisense
Gene id: ENSG00000230461
Gene Name: PROX1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
941-967
0.022
2
6mer
726-738
0.005
1
RP11-218M22.1
hsa-miR-155-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000537514
Biotype: antisense
Gene id: ENSG00000177406
Gene Name: RP11-218M22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1530-1540
0.023
2
7mer
464-475
0.004
0
RP4-758J24.5
hsa-miR-155-5p
0.730
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000606641
Biotype: lincRNA
Gene id: ENSG00000272091
Gene Name: RP4-758J24.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-27
0.027
4
RP11-866E20.3
hsa-miR-155-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585691
Biotype: lincRNA
Gene id: ENSG00000267462
Gene Name: RP11-866E20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1641-1660
0.012
1
7mer
1514-1536
0.008
0
6mer
1386-1394
0.007
0
LHFPL3-AS1
hsa-miR-155-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000450896
Biotype: retained_intron
Gene id: ENSG00000226869
Gene Name: LHFPL3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
432-450
0.021
5
6mer
728-751
0.006
1
LINC01182
hsa-miR-155-5p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000510907
Biotype: lincRNA
Gene id: ENSG00000250634
Gene Name: LINC01182
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2189-2207
0.011
6
7mer
227-245
0.009
0
6mer
343-358
0.007
6
RP11-576D8.4
hsa-miR-155-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442318
Biotype: lincRNA
Gene id: ENSG00000224717
Gene Name: RP11-576D8.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
267-293
0.027
7
PCGEM1
hsa-miR-155-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000454040
Biotype: lincRNA
Gene id: ENSG00000227418
Gene Name: PCGEM1
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1400-1410
0.027
3
XXyac-YX155B6.5
hsa-miR-155-5p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000432038
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-253
0.027
2
XLOC_000507
hsa-miR-155-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000360
Biotype: transcript isomorph
Gene id: XLOC_000507
Gene Name: XLOC_000507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1773-1782
0.019
1
6mer
268-289
0.006
2
6mer
935-950
0.002
1
XLOC_012382
hsa-miR-155-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025133
Biotype: transcript isomorph
Gene id: XLOC_012382
Gene Name: XLOC_012382
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2608-2624
0.016
0
6mer
2713-2726
0.006
1
6mer
1806-1822
0.004
1
XLOC_011476
hsa-miR-155-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023277
Biotype: transcript isomorph
Gene id: XLOC_011476
Gene Name: XLOC_011476
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
196-214
0.027
1
RP11-359E10.1
hsa-miR-155-5p
0.725
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000603468
Biotype: lincRNA
Gene id: ENSG00000270607
Gene Name: RP11-359E10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
267-281
0.027
1
RP11-6O2.4
hsa-miR-155-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566974
Biotype: antisense
Gene id: ENSG00000261054
Gene Name: RP11-6O2.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
84-108
0.015
0
6mer
175-195
0.006
1
6mer
508-521
0.005
3
XLOC_008486
hsa-miR-155-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018206
Biotype: transcript isomorph
Gene id: XLOC_008486
Gene Name: XLOC_008486
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-191
0.014
1
7mer
1433-1448
0.007
0
6mer
206-232
0.003
1
6mer
1039-1055
0.003
1
USP3-AS1
hsa-miR-155-5p
0.724
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558831
Biotype: antisense
Gene id: ENSG00000259248
Gene Name: USP3-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
569-596
0.026
4
RP5-896L10.1
hsa-miR-155-5p
0.723
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425113
Biotype: antisense
Gene id: ENSG00000232825
Gene Name: RP5-896L10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2057-2067
0.021
Not Conserved
6mer
446-458
0.003
1
6mer
1138-1150
0.002
0
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