LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
TBX5-AS1
hsa-miR-155-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000528549
Biotype: antisense
Gene id: ENSG00000255399
Gene Name: TBX5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3481-3506
0.016
1
7mer
3481-3491
0.011
1
XXyac-YX155B6.5
hsa-miR-155-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411978
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
131-150
0.028
2
LINC01097
hsa-miR-155-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_034054.1
Biotype: lincRNA
Gene id: NR_034054.1 (gene)
Gene Name: LINC01097
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
480-505
0.028
1
HCG18
hsa-miR-155-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000444126
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3095-3110
0.009
1
6mer
339-354
0.005
2
6mer
4323-4339
0.005
1
6mer
563-579
0.004
1
6mer
2025-2041
0.002
1
6mer
4035-4053
0.002
0
RP11-637A17.2
hsa-miR-155-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000500695
Biotype: lincRNA
Gene id: ENSG00000247363
Gene Name: RP11-637A17.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
641-656
0.019
0
6mer
118-137
0.005
2
6mer
1346-1366
0.003
2
LINC01108
hsa-miR-155-5p
0.737
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000427276
Biotype: lincRNA
Gene id: ENSG00000226673
Gene Name: LINC01108
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2436-2458
0.014
2
7mer
2005-2021
0.006
5
7mer
2292-2314
0.005
5
6mer
1971-1995
0.002
9
XLOC_009728
hsa-miR-155-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021113
Biotype: transcript isomorph
Gene id: XLOC_009728
Gene Name: XLOC_009728
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
920-945
0.027
0
XLOC_008968
hsa-miR-155-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018618
Biotype: transcript isomorph
Gene id: XLOC_008968
Gene Name: XLOC_008968
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
702-728
0.014
1
7mer
161-187
0.013
1
XLOC_003221
hsa-miR-155-5p
0.736
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00007239
Biotype: transcript isomorph
Gene id: XLOC_003221
Gene Name: XLOC_003221
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
683-698
0.027
1
RP11-490M8.1
hsa-miR-155-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000565283
Biotype: lincRNA
Gene id: ENSG00000260025
Gene Name: RP11-490M8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
20-43
0.023
1
6mer
106-129
0.004
3
XLOC_013995
hsa-miR-155-5p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029073
Biotype: transcript isomorph
Gene id: XLOC_013995
Gene Name: XLOC_013995
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1235-1254
0.019
0
6mer
4113-4131
0.006
0
6mer
2232-2254
0.002
0
RP11-443N24.2
hsa-miR-155-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000536949
Biotype: lincRNA
Gene id: ENSG00000256686
Gene Name: RP11-443N24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
565-576
0.022
1
6mer
383-409
0.005
1
RP11-111A21.1
hsa-miR-155-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000556620
Biotype: lincRNA
Gene id: ENSG00000258526
Gene Name: RP11-111A21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
571-595
0.021
1
6mer
291-301
0.004
1
6mer
651-670
0.002
Not Conserved
XXyac-YX155B6.5
hsa-miR-155-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000597931
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-86
0.023
2
6mer
418-437
0.004
1
LINC01109
hsa-miR-155-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000603837
Biotype: lincRNA
Gene id: ENSG00000271167
Gene Name: LINC01109
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1873-1899
0.018
0
6mer
2403-2421
0.005
5
7mer
1988-2012
0.004
1
XLOC_002048
hsa-miR-155-5p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004205
Biotype: transcript isomorph
Gene id: XLOC_002048
Gene Name: XLOC_002048
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-42
0.023
1
6mer
105-128
0.004
3
LINC00883
hsa-miR-155-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000466734
Biotype: lincRNA
Gene id: ENSG00000243701
Gene Name: LINC00883
UCSC graphic:
Expression:
  Cell Line Tissue Category
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2009-2022
0.010
0
7mer
1578-1601
0.010
3
7mer
851-867
0.004
1
6mer
514-524
0.003
2
RP11-258O13.1
hsa-miR-155-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526851
Biotype: lincRNA
Gene id: ENSG00000255209
Gene Name: RP11-258O13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-32
0.027
1
HCG18
hsa-miR-155-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454129
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3095-3110
0.010
1
6mer
339-354
0.005
2
6mer
563-579
0.004
1
6mer
4109-4125
0.004
1
6mer
2025-2041
0.002
1
6mer
4035-4053
0.002
0
XLOC_009549
hsa-miR-155-5p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019755
Biotype: transcript isomorph
Gene id: XLOC_009549
Gene Name: XLOC_009549
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-34
0.027
6
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