LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
RP11-428K3.1
hsa-miR-155-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608517
Biotype: antisense
Gene id: ENSG00000273062
Gene Name: RP11-428K3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
39-54
0.023
1
6mer
342-354
0.005
2
RP11-415A20.1
hsa-miR-155-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427806
Biotype: lincRNA
Gene id: ENSG00000237552
Gene Name: RP11-415A20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-410
0.025
2
6mer
201-212
0.004
0
AC010976.2
hsa-miR-155-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599001
Biotype: antisense
Gene id: ENSG00000231731
Gene Name: AC010976.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
547-574
0.029
1
LINC-PINT
hsa-miR-155-5p
0.750
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000433079
Biotype: antisense
Gene id: ENSG00000231721
Gene Name: LINC-PINT
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
563-581
0.029
1
KANSL1-AS1
hsa-miR-155-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000398275
Biotype: antisense
Gene id: ENSG00000214401
Gene Name: KANSL1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
359-376
0.029
1
RP11-505P4.7
hsa-miR-155-5p
0.749
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429386
Biotype: antisense
Gene id: ENSG00000229862
Gene Name: RP11-505P4.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
481-499
0.029
1
CTD-2302E22.6
hsa-miR-155-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000620835
Biotype: lincRNA
Gene id: ENSG00000274015
Gene Name: CTD-2302E22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-482
0.028
1
RP11-68L18.1
hsa-miR-155-5p
0.747
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522132
Biotype: antisense
Gene id: ENSG00000246792
Gene Name: RP11-68L18.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-226
0.028
1
XLOC_010263
hsa-miR-155-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021000
Biotype: transcript isomorph
Gene id: XLOC_010263
Gene Name: XLOC_010263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
896-915
0.028
1
RP11-814P5.1
hsa-miR-155-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558707
Biotype: antisense
Gene id: ENSG00000250007
Gene Name: RP11-814P5.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
495-510
0.028
Not Conserved
RP11-567C2.1
hsa-miR-155-5p
0.746
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548722
Biotype: lincRNA
Gene id: ENSG00000257194
Gene Name: RP11-567C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
647-667
0.022
7
7mer
335-361
0.006
1
RP11-313I2.11
hsa-miR-155-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527332
Biotype: lincRNA
Gene id: ENSG00000254971
Gene Name: RP11-313I2.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-202
0.028
0
RP11-63E9.1
hsa-miR-155-5p
0.745
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000565399
Biotype: lincRNA
Gene id: ENSG00000259828
Gene Name: RP11-63E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1066-1088
0.022
1
6mer
934-960
0.004
1
6mer
1966-1980
0.002
1
MIR1255B1
hsa-miR-155-5p
0.744
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439234
Biotype: antisense
Gene id: ENSG00000223770
Gene Name: MIR1255B1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2607-2629
0.026
2
6mer
1855-1866
0.002
1
FLJ22763
hsa-miR-155-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_033977.1
Biotype: lincRNA
Gene id: NR_033977.1 (gene)
Gene Name: FLJ22763
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1231-1252
0.020
1
6mer
252-276
0.004
1
6mer
1224-1242
0.004
1
C21orf119
hsa-miR-155-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000534991
Biotype: lincRNA
Gene id: ENSG00000256073
Gene Name: C21orf119
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
770-792
0.021
3
6mer
624-650
0.007
2
RP11-630D6.5
hsa-miR-155-5p
0.743
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000501239
Biotype: antisense
Gene id: ENSG00000245928
Gene Name: RP11-630D6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1645-1667
0.021
3
6mer
1381-1399
0.007
2
RP11-73G16.1
hsa-miR-155-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515329
Biotype: lincRNA
Gene id: ENSG00000251249
Gene Name: RP11-73G16.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
415-435
0.012
1
6mer
362-376
0.008
5
6mer
924-947
0.004
7
6mer
2154-2178
0.003
0
C21orf119
hsa-miR-155-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_026845.1
Biotype: lincRNA
Gene id: NR_026845.1 (gene)
Gene Name: C21orf119
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
767-789
0.021
3
6mer
621-647
0.007
2
MIR124-2HG
hsa-miR-155-5p
0.742
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000519741
Biotype: lincRNA
Gene id: ENSG00000254377
Gene Name: MIR124-2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1919-1943
0.025
3
6mer
1267-1287
0.003
4
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