LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-155-5p


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Gene
miRNA
Score
DIANA Links
LINC00938
hsa-miR-155-5p
0.758
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
7725-7744
0.014
4
6mer
9347-9363
0.004
1
7mer
7441-7462
0.003
0
6mer
1636-1653
0.002
3
6mer
4863-4888
0.002
4
6mer
5586-5599
0.002
0
6mer
1302-1322
0.001
0
PART1
hsa-miR-155-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_028508.1
Biotype: antisense
Gene id: NR_028508.1 (gene)
Gene Name: PART1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
71-95
0.019
4
6mer
259-283
0.005
1
6mer
653-672
0.005
2
RP11-347C18.3
hsa-miR-155-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523905
Biotype: sense_intronic
Gene id: ENSG00000253878
Gene Name: RP11-347C18.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
396-420
0.026
2
6mer
388-407
0.004
1
RP11-131L23.1
hsa-miR-155-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427819
Biotype: antisense
Gene id: ENSG00000223653
Gene Name: RP11-131L23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1368-1395
0.027
0
6mer
1508-1527
0.002
1
RP11-541F9.2
hsa-miR-155-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430776
Biotype: lincRNA
Gene id: ENSG00000228215
Gene Name: RP11-541F9.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1789-1798
0.021
1
6mer
268-289
0.006
2
6mer
951-966
0.002
1
XLOC_010419
hsa-miR-155-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021820
Biotype: transcript isomorph
Gene id: XLOC_010419
Gene Name: XLOC_010419
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2606-2629
0.019
2
6mer
2870-2894
0.008
1
6mer
1288-1307
0.002
1
GTF3C2-AS1
hsa-miR-155-5p
0.757
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416453
Biotype: antisense
Gene id: ENSG00000234945
Gene Name: GTF3C2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
592-619
0.029
2
XLOC_013795
hsa-miR-155-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028704
Biotype: transcript isomorph
Gene id: XLOC_013795
Gene Name: XLOC_013795
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
755-781
0.012
2
6mer
2667-2677
0.012
10
6mer
2699-2721
0.005
2
RP11-506B6.6
hsa-miR-155-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585504
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-263
0.029
3
RP11-506B6.6
hsa-miR-155-5p
0.756
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000585611
Biotype: antisense
Gene id: ENSG00000226440
Gene Name: RP11-506B6.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
236-263
0.029
3
XLOC_009831
hsa-miR-155-5p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020514
Biotype: transcript isomorph
Gene id: XLOC_009831
Gene Name: XLOC_009831
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
612-637
0.026
0
6mer
1082-1105
0.002
0
6mer
3190-3212
0.001
1
XLOC_014082
hsa-miR-155-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029141
Biotype: transcript isomorph
Gene id: XLOC_014082
Gene Name: XLOC_014082
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2561-2586
0.012
2
7mer
665-692
0.010
0
7mer
1655-1668
0.005
2
6mer
1735-1760
0.002
Not Conserved
AF131216.6
hsa-miR-155-5p
0.754
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000498997
Biotype: antisense
Gene id: ENSG00000246477
Gene Name: AF131216.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
18-33
0.009
3
7mer
5075-5096
0.007
1
6mer
250-276
0.005
0
6mer
952-973
0.005
7
6mer
3653-3678
0.002
1
6mer
2161-2187
0.001
Not Conserved
6mer
4328-4351
0.001
1
RP11-122C21.1
hsa-miR-155-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000521199
Biotype: lincRNA
Gene id: ENSG00000253901
Gene Name: RP11-122C21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
65-91
0.017
2
7mer
34-49
0.012
2
AC011294.3
hsa-miR-155-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000451905
Biotype: lincRNA
Gene id: ENSG00000233539
Gene Name: AC011294.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1786-1802
0.024
2
6mer
1648-1671
0.003
Not Conserved
6mer
796-814
0.002
0
WT1-AS
hsa-miR-155-5p
0.753
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_023920.1
Biotype: lincRNA
Gene id: NR_023920.1 (gene)
Gene Name: WT1-AS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2092-2111
0.029
10
XLOC_009066
hsa-miR-155-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019236
Biotype: transcript isomorph
Gene id: XLOC_009066
Gene Name: XLOC_009066
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
389-415
0.029
2
XLOC_003387
hsa-miR-155-5p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006757
Biotype: transcript isomorph
Gene id: XLOC_003387
Gene Name: XLOC_003387
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1962-1987
0.003
0
6mer
1907-1928
0.003
0
6mer
965-990
0.003
0
6mer
1797-1818
0.002
Not Conserved
6mer
1681-1702
0.002
Not Conserved
6mer
1736-1760
0.002
Not Conserved
6mer
1354-1375
0.002
0
6mer
1626-1647
0.002
Not Conserved
6mer
1577-1599
0.001
Not Conserved
6mer
1293-1317
0.001
0
6mer
1461-1482
0.001
Not Conserved
6mer
1183-1204
0.001
0
6mer
1516-1540
0.001
Not Conserved
6mer
1122-1143
0.001
0
6mer
1238-1259
0.001
Not Conserved
CTB-5E10.3
hsa-miR-155-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586894
Biotype: antisense
Gene id: ENSG00000267633
Gene Name: CTB-5E10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-292
0.029
1
CTC-480C2.1
hsa-miR-155-5p
0.751
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000507387
Biotype: lincRNA
Gene id: ENSG00000250874
Gene Name: CTC-480C2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-155-5p
Sequence: uuaaugcuaaucgugauaggggu
MirBase ID: MIMAT0000646
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1087-1104
0.029
2
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